BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927303

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78895.1 | Symbols:  | Reticulon family protein | chr1:29658...   898    0.0  


> AT1G78895.1 | Symbols:  | Reticulon family protein | chr1:29658116-29659976 
REVERSE LENGTH=802
Length=802

 Score =  898 bits (486),  Expect = 0.0
 Identities = 510/522 (98%), Gaps = 0/522 (0%)
 Strand=Plus/Plus

Query  15   gagagagaTGGGAGAAATGGGGAAGGCGATGGGATTGCTGATTAGCGGGACGCTTGTGTA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  104  GAGAGAGATGGGAGAAATGGGGAAGGCGATGGGATTGCTGATTAGCGGGACGCTTGTGTA  163

Query  75   TTACCACTGTGCATATCGTAACGCAACTAttctctctctcttctccgatgttttcattgt  134
            |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct  164  TTACCATTGTGCATATCGTAACGCGACTCTTCTCTCTCTCTTCTCCGATGTTTTCATTGT  223

Query  135  tctcttatgctctctcgccattctcggtctcCTTTTTCGCCAACTCAATGTCTCGGTACC  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  TCTCTTATGCTCTCTCGCCATTCTCGGTCTCCTTTTTCGCCAACTCAATGTCTCGGTACC  283

Query  195  AGTGGATCCACTAGAGTGGCAAATATCACAGGACACAGCAAGTAGCATCGTTGCGCGCTT  254
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  284  AGTGGATCCACTAGAGTGGCAAATATCACAGGACACAGCAAGTAACATCGTTGCACGCTT  343

Query  255  AGCTAATACCGTTGGAGCAGCAGAGGGTGTTCTGAGGGTTGCAGCAACTGGACATGACAA  314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  344  AGCTAATACCGTTGGAGCAGCAGAGGGTGTTCTGAGGGTTGCAGCAACTGGACATGACAA  403

Query  315  GAGACTTTTTGTCAAGGTCGTAATCTGCCTTTACTTCTTATCAGCTCTCGGGCGACTCAT  374
            |||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct  404  GAGACTTTTTGTCAAGGTCGTAATTTGCCTTTACTTCTTATCAGCGCTTGGGCGACTCAT  463

Query  375  ATCAGGTGTAACTGTTGCTTATGCAGGACTATGCTTGTTCTGTCTCTCCATGCTCTGTCA  434
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  464  ATCAGGTGTAACCGTTGCTTATGCAGGACTATGCTTGTTCTGTCTCTCCATGCTCTGTCA  523

Query  435  GACTTCTCAATCTCTTGGAAACTGTCTACTAAAGCGAGGAAATGGCGAGATTTTAGAACA  494
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  524  GACTTCTCAATCTCTTGGAAACTGTGTACTAAAGCGAGGAAATGGCCAGATTTTAGAACA  583

Query  495  AGCAGCACATTCTGATACATAATATGTCTAGCTTTTGTTTAT  536
            || |||||||||||||||||||||||||||||||||||||||
Sbjct  584  AGAAGCACATTCTGATACATAATATGTCTAGCTTTTGTTTAT  625



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25669649117


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5