BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927319
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79010.1 | Symbols: | Alpha-helical ferredoxin | chr1:29724... 1164 0.0
AT1G16700.1 | Symbols: | Alpha-helical ferredoxin | chr1:57097... 896 0.0
> AT1G79010.1 | Symbols: | Alpha-helical ferredoxin | chr1:29724879-29727028
REVERSE LENGTH=1023
Length=1023
Score = 1164 bits (630), Expect = 0.0
Identities = 668/687 (97%), Gaps = 0/687 (0%)
Strand=Plus/Plus
Query 18 ATCAATGGCGTCGATTTTGGCTCGCAGGTCACTGAATACTCTACGTGCTCGACATCTCGT 77
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 92 ATCAATGGCTTCGATTTTGGCTCGCAGGTCACTGAATACTCTCCGTGCTCGACATCTCGT 151
Query 78 TTTTTCAGGGCAAGCTTTGCAGGGATCTCATCTTTCTAGACTGCAGTCCCGTGGTATATC 137
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 152 TTTGTCAGGGCAAGCTTTACAGGGATCTCATCTGTCTAGACTGCAGTCCCGTGGTATATC 211
Query 138 TTATGGCAGCAACAAAGATGATGAAGAAGCAGAGCAACTTTCTAAGGAAATCTCCAAGGA 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TTATGGCAGCAACAAAGATGATGAAGAAGCAGAGCAACTTTCTAAGGAAATCTCCAAGGA 271
Query 198 CTGGAATACTGTCTTTGAACGGAGCATAAACACCCTCTTTCTCACTGAAATGGTCCGCGG 257
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 272 CTGGAATACTGTCTTTGAACGGAGCATAAACACCCTGTTCCTCACAGAAATGGTCCGCGG 331
Query 258 TTTGTCGCTGACCCTCAAGTACTTCTTTGATCCCAAAGTTACTATCAATTATCCATTTGA 317
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 332 TTTGTCGCTGACCCTCAAGTACTTCTTTGATCCAAAAGTTACTATCAATTATCCATTTGA 391
Query 318 GAAGGGTCCACTGAGCCCTCGCTTCCGTGGTGAACATGCTCTTCGCAGATATCCTACCGG 377
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 392 GAAGGGTCCTCTGAGCCCTCGCTTCCGTGGTGAACATGCTCTTCGAAGATATCCTACCGG 451
Query 378 GGAAGAACGCTGCATTGCCTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCAC 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 GGAAGAACGCTGCATTGCCTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCAC 511
Query 438 AATAGAGGCAGAGGAGAGGGAAGATGGAAGCCGCAGAACCACTAGGTATGATATCGACAT 497
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 512 AATAGAGGCAGAAGAGAGGGAAGATGGAAGCCGCAGAACCACTAGGTACGATATCGACAT 571
Query 498 GACAAAATGCATCTACTGTGGTTTCTGCCAAGAAGCTTGCCCCGTTGATGCAATCGTCGA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 572 GACAAAATGCATCTACTGTGGTTTCTGCCAAGAAGCTTGCCCCGTTGATGCAATCGTTGA 631
Query 558 AGGACCTAACTTTGAATTCGCAACTGAGACACACGAGGAACTTCTCTATGACAAAGAAAA 617
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 632 AGGACCTAACTTTGAATTCGCAACCGAGACACACGAGGAACTTCTCTATGACAAAGAGAA 691
Query 618 GCTTCTTGAGAATGGAGATCGATGGGAGACTGAGATCGCTGAGAATCTGAGGTCGGAGAG 677
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 692 GCTTCTTGAGAATGGAGATCGATGGGAGACAGAGATTGCTGAGAATCTGAGGTCGGAGAG 751
Query 678 TCTCTACCGCTGAACCATTATACAACA 704
||||||||||||||||||| |||||||
Sbjct 752 TCTCTACCGCTGAACCATTCTACAACA 778
> AT1G16700.1 | Symbols: | Alpha-helical ferredoxin | chr1:5709725-5711902
FORWARD LENGTH=1061
Length=1061
Score = 896 bits (485), Expect = 0.0
Identities = 611/674 (91%), Gaps = 0/674 (0%)
Strand=Plus/Plus
Query 18 ATCAATGGCGTCGATTTTGGCTCGCAGGTCACTGAATACTCTACGTGCTCGACATCTCGT 77
||| ||||| ||| | | ||||||||||| | | | |||| || |||||||||||||
Sbjct 181 ATCGATGGCTTCGCTACTAGCTCGCAGGTCGTTCAGTGCTCTCCGAGCTCGACATCTCGC 240
Query 78 TTTTTCAGGGCAAGCTTTGCAGGGATCTCATCTTTCTAGACTGCAGTCCCGTGGTATATC 137
|||||||||||||| ||| |||||||||||||| | | | || |||||||||| ||||||
Sbjct 241 TTTTTCAGGGCAAGGTTTACAGGGATCTCATCTCTGTGGGCTACAGTCCCGTGCTATATC 300
Query 138 TTATGGCAGCAACAAAGATGATGAAGAAGCAGAGCAACTTTCTAAGGAAATCTCCAAGGA 197
|||||| ||||||||||||||||||||||| ||||| ||| |||| || |||||||||||
Sbjct 301 TTATGGAAGCAACAAAGATGATGAAGAAGCTGAGCAGCTTGCTAAAGAGATCTCCAAGGA 360
Query 198 CTGGAATACTGTCTTTGAACGGAGCATAAACACCCTCTTTCTCACTGAAATGGTCCGCGG 257
||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| | ||
Sbjct 361 CTGGAGTACTGTCTTTGAACGGAGCATGAACACCCTATTTCTCACTGAAATGGTCAGGGG 420
Query 258 TTTGTCGCTGACCCTCAAGTACTTCTTTGATCCCAAAGTTACTATCAATTATCCATTTGA 317
|||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 421 TTTGTCACTGACCCTCAAGTACTTCTTTGATCCAAAAGTTACAATCAATTATCCTTTTGA 480
Query 318 GAAGGGTCCACTGAGCCCTCGCTTCCGTGGTGAACATGCTCTTCGCAGATATCCTACCGG 377
|||||||||| |||||||||| |||||||||||||| |||||||| || ||||| || ||
Sbjct 481 GAAGGGTCCATTGAGCCCTCGTTTCCGTGGTGAACACGCTCTTCGAAGGTATCCAACTGG 540
Query 378 GGAAGAACGCTGCATTGCCTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCAC 437
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 GGAAGAACGCTGCATTGCCTGCAAACTCTGCGAAGCTGTATGTCCAGCTCAAGCAATCAC 600
Query 438 AATAGAGGCAGAGGAGAGGGAAGATGGAAGCCGCAGAACCACTAGGTATGATATCGACAT 497
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATAGAGGCAGAGGAGCGGGAAGATGGAAGCCGCAGAACCACTAGGTATGATATCGACAT 660
Query 498 GACAAAATGCATCTACTGTGGTTTCTGCCAAGAAGCTTGCCCCGTTGATGCAATCGTCGA 557
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 661 GACGAAATGCATCTATTGTGGTTTCTGCCAAGAAGCTTGCCCTGTTGATGCAATCGTGGA 720
Query 558 AGGACCTAACTTTGAATTCGCAACTGAGACACACGAGGAACTTCTCTATGACAAAGAAAA 617
|||||| |||||||| || ||||| |||||||| ||||||||||| ||||||||||| ||
Sbjct 721 AGGACCAAACTTTGAGTTTGCAACCGAGACACATGAGGAACTTCTGTATGACAAAGAGAA 780
Query 618 GCTTCTTGAGAATGGAGATCGATGGGAGACTGAGATCGCTGAGAATCTGAGGTCGGAGAG 677
||||||||||||||||||| | |||||||| ||||| || ||||||||||||||||||||
Sbjct 781 GCTTCTTGAGAATGGAGATAGGTGGGAGACAGAGATTGCAGAGAATCTGAGGTCGGAGAG 840
Query 678 TCTCTACCGCTGAA 691
|||||||||||||
Sbjct 841 CCTCTACCGCTGAA 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5