BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927326
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79080.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2662 0.0
> AT1G79080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:29746972-29748944 REVERSE LENGTH=1973
Length=1973
Score = 2662 bits (1441), Expect = 0.0
Identities = 1670/1781 (94%), Gaps = 14/1781 (1%)
Strand=Plus/Plus
Query 1 TTGCTGTTCGATTTTAAGCCATGTCGACTCTGTTGAACTCAGTCTTATCCATGGCGGCGA 60
||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 93 TTGCTGTCCGATTTTAAGCCATGTCGACTCTACTGAACTCAGTCTTATCCAT---GGCG- 148
Query 61 ATCCATCGCCGGAATCATCGCCGAGAAAATCCCTAGGCTTTGTTTCTCACATCCCCACCG 120
| || ||||||||||||||||||||| || |||| |||||||| |||||||| | |
Sbjct 149 -T-CA---CCGGAATCATCGCCGAGAAAAGCCGTAGGTTTTGTTTCCCACATCCCTTCTG 203
Query 121 GTTTCCTTCACTTCTCCTCCGTGAATAAAGGTGTCGCTAGGGTTTTAGCTTCGACCCAGA 180
|||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 204 GTTTCCTTCATTTCTCCTCCGTCAGTAAAGGTGTTGCTAGGGTTTTAGCTTCGACCCAGA 263
Query 181 TAACGTTATCCCCTAAAGACTCCGCCTTTACCATTACCGGATCCAGTTGGAAACCCGATT 240
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 264 TAACATTATCCCCTAAAGACTCCGCCTTTACCATTACTGGATCCAGTTGGAAACCCGATT 323
Query 241 TGGGTTCCGGGTCGTTTTCTGATGACCCGAGAAGCGACGAGCCGAGCTTGAGCGATACTT 300
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 324 TGGATTCCGGGTCGTTTTCTGATGACCCGAGAAGCGACGAGCCGAATTTGAGCGATAGTT 383
Query 301 TCTCTCATCTCGAATGTTTAGTCAC-GGATGGGCATAAACCCAATGTAGCTCATTCTACT 359
|||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 384 TCTCTCATCTAGAAAGTTTAGTCACGGGA-GGGCATAAACCCAATGTAGCTCATTCTACT 442
Query 360 CAGCTCTTGTACGATCTCTGCAAAGCCAATAGATTGAAGAAAGCTATTCGTGTGATTGAG 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 443 CAGCTCTTGTACGATCTCTGCAAAGCCAATAGATTGAAGAAAGCCATTCGTGTGATTGAG 502
Query 420 CTTATGGTTAGCTCCGGGATTATACCCGATGCATCTGCTTACACTTATCTGGTTAATCAG 479
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 503 CTTATGGTTAGCTCCGGGATTATACCCGATGCATCTGCTTACACGTATTTGGTTAATCAG 562
Query 480 CTTTGCAAGAGAGGTAACGTTGGTTACGCTATGCAGCTTGTTGAGAAAATGGAAGATCAT 539
||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 563 CTTTGTAAAAGAGGTAACGTTGGTTATGCGATGCAGCTTGTTGAGAAAATGGAAGATCAT 622
Query 540 GGTTTTCCTTCTAATACCGTTACTTACAATGCCTTGGTTCGAGGTCTTTGTATGCTTGGA 599
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GGTTATCCTTCTAATACCGTTACTTACAATGCCTTGGTTCGAGGTCTTTGTATGCTTGGT 682
Query 600 AGCTTAAACCAGAGCTTGCAGTTTGTTGAGAGGTTGATGCAGAAAGGTTTAGCTCCTAAT 659
|||||||| || ||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 683 AGCTTAAATCAAAGCTTACAGTTTGTTGAGAGGTTGATGCAGAAAGGCTTAGCTCCAAAT 742
Query 660 GCTTTCACTTATTCTTTCTTGCTTGAGGCTGCTTATAAAGAACGAGGAACCGACCAAGCT 719
|||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 743 GCTTTCACTTATTCTTTCTTGCTTGAAGCAGCTTATAAAGAACGAGGAACCGACGAAGCT 802
Query 720 GTGAAGCTCTTAGATCAGATCATTGCCAAAGGCGGTCAACCCAATTTGGTTAGCTATAAT 779
||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 803 GTGAAGCTCTTAGATGAGATCATTGTGAAAGGCGGTGAACCCAATTTGGTTAGCTATAAT 862
Query 780 GTGCTCTTGACTGGTTTCTGTAAACAAGGGAGAACGGATGATGCCATGAAGCTGTTTAGG 839
||||| |||||||||||||||||| |||||||||| || ||||||||| ||||||||||
Sbjct 863 GTGCTGTTGACTGGTTTCTGTAAAGAAGGGAGAACAGACGATGCCATGGCGCTGTTTAGG 922
Query 840 GAGTTACCTGCAAAAGGGTTTAAGGCTAATGTGGTGAGCTATAACATTTTGTTGAGGTGT 899
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 923 GAATTACCTGCAAAAGGGTTTAAGGCAAATGTTGTGAGCTATAACATTTTGTTGAGGTGT 982
Query 900 TTGTGCTGTGATGGGAGGTGGGACGAAGCGAATTCCCTCTTGGCTGAGATGGACGGTGGA 959
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 983 TTGTGCTGTGATGGGAGGTGGGAGGAAGCGAATTCGCTCTTGGCTGAGATGGACGGTGGA 1042
Query 960 GATCGAGCTCCTTCAGTGGTTACCTATAACATATTGATCAATTCGTTAGCTTTTCATGGA 1019
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GATCGAGCTCCTTCAGTTGTTACCTATAACATATTGATCAATTCGTTAGCTTTTCATGGA 1102
Query 1020 AGAACAGAGCAGGCAATGCAGGTTTTAAAGGAGATGAGTAAAGGACATCATCATCAGTTT 1079
||||||||||||||| |||||||||||||||||||||| |||||| | |||||||||||
Sbjct 1103 AGAACAGAGCAGGCACTGCAGGTTTTAAAGGAGATGAGCAAAGGA-A--ATCATCAGTTT 1159
Query 1080 AGAGTCACTGCCACGAGCTATAATCCGGTAATCGCCCGTCTGTGCAAGGAAGGAAAAGTT 1139
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1160 AGAGTCACTGCCACGAGCTATAATCCGGTGATCGCCCGTCTGTGCAAGGAAGGAAAAGTT 1219
Query 1140 GATCTTGTGGTGAAATGTCTAGACGAGATGATATACCGGCGTTGTAAACCCAACGAAGGA 1199
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1220 GATCTTGTTGTGAAATGTCTAGACGAGATGATATACCGGCGTTGTAAACCAAACGAAGGA 1279
Query 1200 ACGTACAGCGCCATAGGTGCATTATGCGAGCATAACGGCAAGGTGCAGGAAGCCTTCTAC 1259
||||||| || |||||| | ||||||||||||||| |||||||||||||||| || |||
Sbjct 1280 ACGTACAATGCAATAGGTTCGTTATGCGAGCATAACAGCAAGGTGCAGGAAGCGTTTTAC 1339
Query 1260 ATAATACAGAGCTTAAGTAACAAGCAGAAATGCTGTACGCATGACTTCTACAAAAGCGTA 1319
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1340 ATAATACAGAGCTTAAGCAACAAGCAGAAATGCTGCACGCATGATTTCTACAAAAGCGTA 1399
Query 1320 ATCACGAGTATGTGCAGGAAAGGTAACACCTTTGCAGCGTTTCAGCTCTTGTACGAGATG 1379
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1400 ATCACGAGTCTCTGCAGGAAAGGTAACACCTTTGCAGCGTTCCAGCTCTTGTACGAGATG 1459
Query 1380 ACTAGGTGCGGGTTTGATCCTGATGCGCACACCTACTCGGCTTTGATCAGAGGTCTGTGT 1439
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1460 ACTAGGTGCGGGTTTGATCCCGATGCGCACACCTACTCGGCTTTGATCAGAGGGCTGTGT 1519
Query 1440 CTGGAAGGGATGTTTATAGGGGCTATGGAGGTTTTGTCGATAATGGAGGAGAGCGAGTAT 1499
|||||||||||||||| ||| || ||||||||||||||||||||||| ||||| ||| ||
Sbjct 1520 CTGGAAGGGATGTTTACAGGAGCCATGGAGGTTTTGTCGATAATGGAAGAGAGTGAGAAT 1579
Query 1500 TATAAACCTACAGTAGATAACTTTAATGCAATGATTCTAGGGTTGTGCAAGATAAGGAGG 1559
| |||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1580 TGTAAACCTACAGTGGATAACTTTAACGCCATGATCCTAGGGTTGTGCAAGATAAGGAGG 1639
Query 1560 ACAGATTTGGCATTGGAGGTGTTTGAGATGATGGTTGGGAAGAAGAGAATGCCGAATGAG 1619
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1640 ACAGATTTGGCAATGGAGGTGTTTGAGATGATGGTTGAGAAGAAGAGAATGCCGAATGAG 1699
Query 1620 ACAACATATGCGATAATCGTTGAAGGTATAGCACATGAGGATGAATTGGAGCTGGCTAAA 1679
||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1700 ACAACATATGCGATACTCGTTGAAGGGATAGCTCATGAGGATGAATTGGAGCTGGCTAAA 1759
Query 1680 GAAGTTCTGGAGGAGCTACGATCGCGCAAGGTTATAGGACAGAACGCAGTAGATAGGATT 1739
|||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1760 GAAGTTCTTGATGAGCTACGATTGCGTAAGGTTATAGGACAGAACGCAGTAGATAGGATT 1819
Query 1740 GTGATGCAGTTCAATTTAGATTGATGGGTAGGAGGCGAAGA 1780
|| ||||||||||||||||||||||||||||||||||||||
Sbjct 1820 GTAATGCAGTTCAATTTAGATTGATGGGTAGGAGGCGAAGA 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88202357565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5