BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927328

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79100.1 | Symbols:  | arginine/serine-rich protein-related ...  86.1    2e-16


> AT1G79100.1 | Symbols:  | arginine/serine-rich protein-related 
| chr1:29753648-29754388 FORWARD LENGTH=213
Length=213

 Score = 86.1 bits (46),  Expect = 2e-16
 Identities = 64/72 (89%), Gaps = 3/72 (4%)
 Strand=Plus/Plus

Query  172  CAATAGGAGATGCGTACGTTGAATTCAAGGC---AAGAGCGGATGCTGAGAAACCACAGC  228
            ||| ||||||||| || ||||||||||||||   || ||| |||||||||||||||||||
Sbjct  83   CAAGAGGAGATGCATATGTTGAATTCAAGGCAAAAATAGCTGATGCTGAGAAACCACAGC  142

Query  229  TGTACATGGATG  240
            ||||||||||||
Sbjct  143  TGTACATGGATG  154



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5