BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927333
Length=2521
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79150.1 | Symbols: | binding | chr1:29772588-29777989 REVE... 4013 0.0
> AT1G79150.1 | Symbols: | binding | chr1:29772588-29777989 REVERSE
LENGTH=2736
Length=2736
Score = 4013 bits (2173), Expect = 0.0
Identities = 2408/2521 (96%), Gaps = 18/2521 (1%)
Strand=Plus/Plus
Query 12 GTGGTGGTGGTGGGCAAAAGTAGGCGTAAACAGAAGGTTATACCTCCACCGCAGCTTCCG 71
|||||| | ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 107 GTGGTGATAATGGGCAAAAATAGGCGTAAACAGAAGGTTATACCTCCACCGCTGCTTCCG 166
Query 72 CCGGATGTACCCGAAGAGGATATTGAGTTTTCCGACGAGGATTTGAAGTACGTCGAAGAG 131
|| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 167 CCAGATGTAGCCGAAGAGGATATTGAGTTTTCCGACGAGGATTTGAAGTATGTCAAAGAG 226
Query 132 AACACTGAATACGCCCGATTCGTCTCTCGTCTTGACACCGCCGCTATCAATAAGCAATGC 191
||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 227 AACACAGATTACGCCCAATTCGTCTCTCAAATTGACACCGCCGCTATCAATAAGCAATGT 286
Query 192 GGTGGTAGAGTGAA-GACAGTGGAGGATAAGTATgaagaagaaagatcaaagaagaagac 250
||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 287 GGTGGTAGAGT-AATGACAGTGGAGGATAAGTATGAAGAAGAACGATCAAAGAGGAAGAC 345
Query 251 aattcaggaagagaaagggaaTGGCGAGATTCTAGTGGATCCTGTTGATGTGCTCCCTGT 310
| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 346 ACTTCAGGAAGAGAAAGGGAATGGCGAGATCCTTGTGGATCCTGTTGATGTGCTCCCTGT 405
Query 311 CAAGACTTTAGATGGAAAACTTCACTATCGAACAGAGTCAAAGAAGTCAAAACTAGCTGA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CAAGACTTTAGATGGAAAACTTCACTATCGAACAGAGTCAAAGAAGTCAAAACTAGCTGA 465
Query 371 AGCCGACACAAATGAAGCAGAGAAGGATGTTCTTGATGATGATA-ATATATTGAACAAAT 429
|||||| ||| ||||||||||||||||||||||||| ||||| | || ||||||||||||
Sbjct 466 AGCCGAAACAGATGAAGCAGAGAAGGATGTTCTTGAAGATGA-ACATGTATTGAACAAAT 524
Query 430 CTCaaaggagagaaaaagctaaaaagagtaaaagggaggcaaagaaaCATGAGAAGGATT 489
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 525 CTCAAAGAAGAGAAAAAGCTAAAAAGAGTAAAAGGGAGGCAAAGAAACATGAGAAAGATT 584
Query 490 TGCCTAATGAGATTTTACAAGA-G--GAAGAAACGCCCCAAGCCGCACTTCTGGCAGAAG 546
||||| ||||||| |||||||| | |||||||| ||||||||||| ||||||||||||
Sbjct 585 TGCCTGATGAGATATTACAAGAGGAAGAAGAAACTCCCCAAGCCGCTGTTCTGGCAGAAG 644
Query 547 TGAAAGAAGAACTATCTGCTGAAGAGACATTTGAAAATAAGAAAAATAAACTCGCTGAAT 606
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct 645 TGAAAGAAGAACTATCTGCTGAAGAGTCATTTGAAAATAAGAAAAATAAAATCGCGGAAT 704
Query 607 TGGGAATGCTACTACTTTCTGATCCTGAGGCAAACATAAAATCTTTAAAGGAAATGTTAG 666
||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||
Sbjct 705 TGGGAATGCTACTACTTTCTGATCCAGAGGCAAACATAAAAACTTTGAAGGATATGTTAG 764
Query 667 ATATCTGCAAGGATGAGAATACAAAGATAGTGAAACTTGGCTTGTTATCTCTGTTGGCCG 726
|||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||
Sbjct 765 ATATCTGCAAGGATCAGAATACGAAGATTGTGAAACTTGCCTTGTTATCTCTGTTGGCCG 824
Query 727 TATTCAAAGATATTATTCCTGGCTATCGGATTAGACTTCCTACAGAAAAGGAGCTTGAGA 786
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 825 TATTTAAAGATATTATTCCTGGCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGA 884
Query 787 TGAAGATCTCAAAGGAAGTGAAGAAAACCCGGTTCTATGAGTCTACTCTATTAAAAGCGT 846
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 885 TGAAGATCTCAAAGGAAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTT 944
Query 847 ACAAGTCATATCTGCAGAAGTTGATTATATTTGAAACGAAGTCAGTATATAACCAAATTG 906
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 945 ACAAGTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAATTG 1004
Query 907 CCAATCGGTGCCTTTGTACATTGCTGGAAGCAGTTCCTCACTTCAACTACCGTGATAACC 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CCAATCGGTGCCTTTGTACATTGCTGGAAGCAGTTCCTCACTTCAACTACCGTGATAACC 1064
Query 967 TGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGGAGACTCTGTT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGGAGACTCTGTT 1124
Query 1027 GCTCTACTATCAGGTCTCTTTTCTCAAATGAAGGGAAACATGGTGGTGAGCTGACCGTGC 1086
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACATGGTGGTGAGCTGACCGTGC 1184
Query 1087 AAGCTGTACGCTTGATTGCTGATCATGTCAAAGCTCAGAACTGCCAACTTCATCCTAATG 1146
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1185 AAGCTGTACGCCTGATTGCTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATG 1244
Query 1147 CTATAGAGGTGTTCATGTCCATTCGCTTTGACGAGGATATCGGAAAGCGTGACAAAGAGG 1206
|||| |||||||||||||||||||||||||| |||||||| ||||||| | |||||||||
Sbjct 1245 CTATCGAGGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGG 1304
Query 1207 ATGAACATAACAAGAAATATAAGAAAATTAATAAAAGAAAAGCCCAGGAGGAGCAAAATC 1266
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1305 ATGAACATAACAAGAAATATAAGAAAAATAATAAAAGAAAAACCCAGGAGGAGCAAAATC 1364
Query 1267 AAGTGCAGGAAAATGAGAGGAAGAAATCAAAGCAAGAAATGATGTCTAAGATCAGAGACG 1326
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1365 AAGTGCAGGAAAATGAGAGGAAGAAATCAAAGAAAGATATGATGTCTAAGATCAGAGACG 1424
Query 1327 AGGTTTCTGCTGATTACAGAGGAGTTACCTATGAACCGGATGCTAAGGAGCGGCGAAAGA 1386
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AGGTTTCTGCTGATCACAGAGGAGTTACCTATGAACCGGATGCTAAGGAGCGGCGAAAGA 1484
Query 1387 TGCAGACAGAGACACTCTCTGCTGTTTTTGAGACCTATTTCCGTATCCTGAGAAACACAA 1446
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TGCAGACAGAGACACTTTCTGCTGTTTTTGAGACCTATTTCCGTATCCTGAGAAACACAA 1544
Query 1447 TGTATACAATTGGCGAAAGAACAGAAGAAAATCCAACTTCAAATCCGGGTGCCTTTGGAT 1506
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1545 TGTATACAATTGGCGAAAGAACAGAAGAAATTCCAACTTCAAATCCGGGTGCCTTTGGAT 1604
Query 1507 CACACCCTTTGCTTGCTCCATGCTTGGATGGGTTGGCAAAATTCACCCAACAATTGGACT 1566
| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1605 CGCACCCTTTGCTAGCTCCATGCTTGGATGGGTTGGCAAAATTCACCCAACAACTGGACT 1664
Query 1567 TGGACTACATCGGAGATCTCATGAACTATCTAAAGAAGCTTGCTTCTAGCAGTAGC-G-- 1623
|||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 1665 TGGACTACATGGGAGATCTAATGAACTATCTCAAGAAGCTTGCTTCTAGCAGTAGCAGCG 1724
Query 1624 TCTCCAACAACACAAAGCAGAAAAACTCAAAACTGTTGACAGTATCTGAACGCCTTAGGT 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 TCTCCAACAACACAAAGCAGAAAAACTCAAAACTGTTGACAGTATCTGAACGCCTTAGGT 1784
Query 1684 GTTGTCTTGTCGCCTTCAAAGTCATGAGGAGCAACTTAAATGCCTTGAATGTTGACTTGC 1743
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 GTTGCCTTGTCGCCTTCAAAGTCATGAGGAGCAACTTAAATGCCTTGAATGTTGACTTGC 1844
Query 1744 AAGACTTCTTTGTCCAACTTTACAACCTCATTCTCGAGTACCGCCCTGGAAGAGATTCAG 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 AAGACTTCTTTGTCCAACTTTACAACCTCATTCTCGAGTACCGCCCTGGAAGAGATTCAG 1904
Query 1804 GTGTAGTCTTGGCTGAGTCTCTGAAGATAATGTTGTGCGACGACAGACATCAAGACATGC 1863
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 GTGTAATCTTGGCTGAGTCTCTGAAGATAATGTTGTGCGACGACAGACATCAAGACATGC 1964
Query 1864 AAAAAGCAGCCGCATTTGTAAAACGTTTAGCCACATTCGCGCTATGCTTTGGATGTGCCG 1923
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 AAAAAGCAGCTGCATTTGTAAAACGTTTAGCCACATTCGCGCTATGCTTTGGATGTGCCG 2024
Query 1924 AATCTATGTCTGCACTAGTCACTTTGAAAACGCTGCTTCAGAAGAACGTGAAATGCAGAA 1983
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2025 AATCTATGTCTGCGCTAGTCACTTTGAAAACTCTGCTTCAGAAGAACGTGAAATGCAGAA 2084
Query 1984 ACCTTCTAGAGAACGATGCTGGAGGCGGCTCTGTTTCTGGTTCAATCGCAAAATATCAGC 2043
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2085 ACCTTCTAGAGAACGATGCTGGAGGCGGCTCTGTTTCCGGTTCAATTGCAAAATATCAGC 2144
Query 2044 CGTATGCAACAGATCCTAACCTAAGCGGGGCCTTAGCAACAGTGCTTTGGGAACTCAGTC 2103
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2145 CGTATGCAACAGATCCTAACCTAAGCGGGGCTTTAGCAACAGTGCTTTGGGAACTCAGTC 2204
Query 2104 TCTTGAGCAAACATTATCATCCTGCGATCTCAACAATGGCCACAACAGTCTCCAACATGA 2163
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2205 TCTTGAGTAAACATTATCATCCTGCGATCTCAACAATGGCCACAACAGTCTCCAACATGA 2264
Query 2164 ACACTTCTCAAAGCCAAACATTTCTGTCTGCAGTGACTCCACAACAGGCATTTGCAGATT 2223
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2265 ACACTTCTCAGAGCCAAACATTTCTTTCTGCAGTGACTCCACAACAGGCTTTTGCAGATT 2324
Query 2224 TCTCTCTTGTAAAGGAATCGTTTGAGCTTAAGAACGAGTCTCGGAAACTGAACAA-A--C 2280
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | |
Sbjct 2325 TCTCTCTTGTAAAGGAATCGTTTGAGCCGAAGAACGAGTCTCGGAAATTGAACAACAAAC 2384
Query 2281 GGAAACGAGAGAGTTTGCCTGAAGAAGCAAAGAATGCTCCGGAAATCGACATGGTTAAGC 2340
||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 2385 GGAAACGGGAGAGTTTGCCTGAAGAAGCTAAGAATGTTCCGGAAATAGACATGGTTAAGC 2444
Query 2341 TCAGCAAGAAATTGAAAGAGAACTTTACTATTCTTCGAGATATAAAAGAGGACAAGAGAG 2400
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2445 TCAGCAAGAAATTGAAAGAGAACTTTACTATTCTTCGGGATATAAAAGAGGACGAGAGAG 2504
Query 2401 TGAGAATGGAGTTG---CAGTCTGA-GAAGAAAAAACCATTGAAGAAACAGAATAACGTG 2456
|||||||||||||| |||||||| || |||||||||||||||||||||||| ||||||
Sbjct 2505 TGAGAATGGAGTTGTTGCAGTCTGAAGA-GAAAAAACCATTGAAGAAACAGAACAACGTG 2563
Query 2457 GTGAAGAAGAAACTTAAGAACCCTAAATCCAAAAAGAAAATTTGAAAGGCTTTTTGTCTT 2516
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2564 GTGAAGAAGAAACTTAAGAACCCTAAATCCAAAAAGCAAATTTGAAAGGCTTTTTGTTTT 2623
Query 2517 C 2517
|
Sbjct 2624 C 2624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125116355842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5