BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927337
Length=520
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79200.1 | Symbols: | unknown protein; Has 30201 Blast hits... 774 0.0
> AT1G79200.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29794387-29796040
FORWARD LENGTH=826
Length=826
Score = 774 bits (419), Expect = 0.0
Identities = 479/508 (94%), Gaps = 3/508 (1%)
Strand=Plus/Plus
Query 4 TAGTCCGTCGGGAAATAATGGGAAGCGAACGGAGCCCCAAGGAGAAGAAGAGAAGCAGAG 63
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TAGTCCGTCGGGAAATAATGGTAAGCGAACGGAGCTCCAAGGAGAAGAAGAGAAGCAGAG 60
Query 64 CTCGGAGCGAAGATTCTTCATCTTCCGATTACGAAGGGAAAGTAAAGAGGCATCGAGGAA 123
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 61 CTCGGAGCGAAGATTCTTCATCTTCCGATTACGAAGAGAAAGTTAAGAGGCATCGAGGAA 120
Query 124 CAGAGAAAGATGATGAAAGGAGAAGTAGGAGAAGTGAGAAGAAGGATAAGAAATCTCACA 183
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 CAGAGAAAGATGATGAAAGGAGAAGTAGGAGAAGTGATAAGAAGGATAAGAAATCTCACA 180
Query 184 AGCACCACAAATCCAGTTCATCGAAGAAGTCAAAGGATGATAAGCC-AAAAAGGAAACAT 242
||||||||||||||||| |||| |||||||| |||||||||||||| |||||| ||||||
Sbjct 181 AGCACCACAAATCCAGTACATCAAAGAAGTCCAAGGATGATAAGCCGAAAAAG-AAACAT 239
Query 243 GCAGAAGGCGACCACAAGCTAAAAGAGGGGATTCCAGAGCTATCAATGGAGGACTACTTC 302
| ||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 240 ACGGAAAGCGACCACAAGCTAAAAGAGGGAATTCCAGAGCTATCAATGGAAGACTACTTC 299
Query 303 TCGAAGAACAACGAATTTGCTACATGGCTGAAAGAAGAAAAGCGTACTTACTTTAATGAT 362
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 TCGAAAAACAACGAGTTTGCTACATGGCTGAAAGAAGAAAAACGTACTTACTTTAATGAT 359
Query 363 CTCACTACCGAAGCTGCACGAGAATTGTTCTCACGTTTTGTCAAGAGATGGAACAGAGGG 422
||||| |||||||||||||||| | |||||||||| |||||||||||||||||||||||
Sbjct 360 CTCACGACCGAAGCTGCACGAGGACTGTTCTCACGATTTGTCAAGAGATGGAACAGAGGA 419
Query 423 AAACTCGAATCTCAATACTATGAGGGAATCTCCACTGCCCCACGAACAGCTCACAACTGG 482
|||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 420 AAACTCGAGTCTCGATACTACGAGGGAATCTCCACTGCCCCACGAACAGCTCACGACTGG 479
Query 483 ATGATCAAGCATAGGTGAAAAAA-GCAA 509
|||||||||| |||||||||||| ||||
Sbjct 480 ATGATCAAGCGTAGGTGAAAAAAAGCAA 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24865902765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5