BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927338
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79210.1 | Symbols: | N-terminal nucleophile aminohydrolase... 1279 0.0
AT1G16470.1 | Symbols: PAB1 | proteasome subunit PAB1 | chr1:56... 865 0.0
> AT1G79210.1 | Symbols: | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr1:29796081-29798783
REVERSE LENGTH=1061
Length=1061
Score = 1279 bits (692), Expect = 0.0
Identities = 724/739 (98%), Gaps = 3/739 (0%)
Strand=Plus/Plus
Query 16 GGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGCCCATCAGGGA 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGCCCATCAGGGA 200
Query 76 AGCTGGTTCAGATAGAACATGCCCTAACAGCTGTTGGATCAGGCCAAACATCTCTGGGAA 135
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 201 AGCTGGTTCAGATAGAACATGCCCTAACAGCTGTTGGATCAGGCCAAACATCACTTGGAA 260
Query 136 TTAAAGCTTCAAATGGAGTTGTCATTGCAACGGAAAAGAAACTTCCTTCAATATTGGTTG 195
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 261 TTAAAGCTTCAAATGGAGTTGTCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTG 320
Query 196 ATGAAGCTTCTGTTCAAAAGATTCAGCATTTGACTCCCAACATTGGAACTGTTTACAGTG 255
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 321 ATGAAGCGTCTGTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAGTG 380
Query 256 GTATGGGTCCTGATTTCCGAGTTCTTGTGCGAAAGAGTAGGAAGCAGGCTGAGCAATATC 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GTATGGGTCCTGATTTCCGAGTTCTTGTGCGAAAGAGTAGGAAGCAGGCTGAGCAATATC 440
Query 316 TCCGAT-TGTACAAGGAACCCATCCCCGTTACTCAACTTGTAAGGGAAACTGCCACGGTG 374
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TCCG-TCTGTACAAGGAACCCATCCCCGTTACTCAACTTGTAAGGGAAACTGCCACGGTG 499
Query 375 ATGCAAGAGTTCACTCAATCGGGTGGTGTTAGGCCTTTTGGAGTTTCTCTACTGGTGGCT 434
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 500 ATGCAAGAGTTCACTCAATCGGGTGGTGTTAGGCCGTTTGGAGTTTCTCTACTGGTGGCT 559
Query 435 GGGTATGATGACAAGGGTCCACAACTGTATCAAGTGGATCCATCTGGCTCTTATTTCTCA 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GGGTATGATGACAAGGGTCCACAACTGTATCAAGTGGATCCATCTGGCTCTTATTTCTCA 619
Query 495 TGGAAAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGG 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TGGAAAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGG 679
Query 555 TACACTGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAA 614
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 TACACAGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAA 739
Query 615 GGTTTCGAGGGAGAAATCTCGAGCAAAAACATCGAGATTGGCAAAATCGGTGCTGACAAA 674
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 740 GGTTTCGAGGGAGAAATCTCAAGCAAAAACATCGAGATTGGCAAAATCGGTACTGACAAA 799
Query 675 GTTTTCAGGGTGCTAACACCAGCAGAAATCGATGATTACTTGGCTGAAGTAGAGTAAA-C 733
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 800 GTTTTCAGGGTGCTAACACCAGCAGAAATCGATGATTACTTGGCTGAAGTCGAGTAAAAC 859
Query 734 TTTGACTTAACCGTGCAAC 752
||| |||||||||||||||
Sbjct 860 TTTCACTTAACCGTGCAAC 878
> AT1G16470.1 | Symbols: PAB1 | proteasome subunit PAB1 | chr1:5622786-5625643
FORWARD LENGTH=1059
Length=1059
Score = 865 bits (468), Expect = 0.0
Identities = 635/715 (89%), Gaps = 14/715 (2%)
Strand=Plus/Plus
Query 24 ATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGCCCATCAGGGAAGCTGGTT 83
||||| || |||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 148 ATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACTTTCAGCCCATCTGGTAAGCTGGTG 207
Query 84 CAGATAGAACATGCCCTAACAGCTGTTGGATCAGGCCAAACATCTCT-GGGAATTAAAGC 142
||||||||||||||||| |||||||||||||| |||||||||||| | ||| ||||||||
Sbjct 208 CAGATAGAACATGCCCTTACAGCTGTTGGATCTGGCCAAACATCTTTAGGG-ATTAAAGC 266
Query 143 TTCAAATGGAGTTGTCATTGCAACGGAAAAGAAACTT-CCTTCAATAT-TGGTTGATGAA 200
||| |||||||||||||||||||| |||||| || || ||||| || | |||||||||||
Sbjct 267 TTCTAATGGAGTTGTCATTGCAACTGAAAAG-AAGTTGCCTTCTAT-TCTGGTTGATGAA 324
Query 201 GCTTCTGTTCAAAAGATTCAGCATTTGACTCCCAACATTGGAACTGTTTACAGTGGTATG 260
|| ||||||||||| ||||||||||||||||| || |||||| |||||||||||| |||
Sbjct 325 GCATCTGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGTGGCATG 384
Query 261 GGTCCTGATTTCCGAGTTCTTGTGCGAAAGAGTAGGAAGCAGGCTGAGCAATATCTCCGA 320
||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||| ||
Sbjct 385 GGTCCTGATTTTCGAGTTCTTGTTAGGAAGAGTAGGAAACAGGCTGAGCAATATCTTCG- 443
Query 321 T-TGTACAAGGAACCCATCCCCGTTACTCAACTTGTAAGGGAAACTGCCACGGTGATGCA 379
| ||||||| ||||||||||| ||||| ||||||||||||||||| || || || |||||
Sbjct 444 TCTGTACAAAGAACCCATCCCTGTTACCCAACTTGTAAGGGAAACCGCTACTGTTATGCA 503
Query 380 AGAGTTCACTCAATCGGGTGGTGTTAGGCCTTTTGGAGTTT-CTCTACTGGTGGCTGGGT 438
|||||| ||||||||||| |||||||||||||| || |||| || | ||||||||||| |
Sbjct 504 AGAGTTTACTCAATCGGGAGGTGTTAGGCCTTTCGGGGTTTCCT-TGCTGGTGGCTGGAT 562
Query 439 ATGATGACAAGGGTCCACAACTGTATCAAGTGGATCCATCTGGCTCTTATTTCTCATGGA 498
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 563 ATGATGACAAGGGTCCACAATTGTATCAGGTGGATCCATCTGGCTCTTATTTCTCCTGGA 622
Query 499 AAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGGTACA 558
||||||| || ||||| ||||| ||||| |||||||| || || |||||||| |||||||
Sbjct 623 AAGCTTCAGCCATGGGGAAGAACGTTTCTAATGCAAAAACCTTCCTTGAGAAAAGGTACA 682
Query 559 CTGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAAGG-T 617
| ||||| ||||||||||| |||||||||||||| || ||| |||||||||| ||||| |
Sbjct 683 CAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGGCT 742
Query 618 TTCGAGGGAGAAATCTCGAGCAAAAACATCGAGATTGGCAAAATCGGTGCTGACAAAGTT 677
|| |||||||| ||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct 743 TT-GAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGCTGACAAAGTT 801
Query 678 TTCAGGGTGCTAACACCAGCAGAAATCGATGATTAC-TTGGCTGAAGTAGAGTAA 731
|||||||| |||||||||||||| |||||||||||| ||| ||||||| ||||||
Sbjct 802 TTCAGGGTACTAACACCAGCAGAGATCGATGATTACCTTG-CTGAAGTCGAGTAA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36520224869
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5