BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927353
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79340.1 | Symbols: AtMC4, MC4 | metacaspase 4 | chr1:298427... 2206 0.0
> AT1G79340.1 | Symbols: AtMC4, MC4 | metacaspase 4 | chr1:29842771-29844638
FORWARD LENGTH=1605
Length=1605
Score = 2206 bits (1194), Expect = 0.0
Identities = 1263/1297 (97%), Gaps = 2/1297 (0%)
Strand=Plus/Plus
Query 4 ATCAGATC--TTTTTGTCAATGGCGAAAAAGGCGGTGCTTATTGGGATCAATTACCCAGG 61
|||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 ATCAGATCATTTTTTCTCAATGACGAAAAAGGCGGTGCTTATTGGGATCAATTACCCAGG 119
Query 62 AACCAAGGCGGAGTTACGGGGATGCGTCAACGATGTTCGTCGTATGTACAAATGTCTCGT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AACCAAGGCGGAGTTACGGGGATGCGTCAACGATGTTCGTCGTATGTACAAATGTCTCGT 179
Query 122 CGAACGGTACGGCTTCTCCGAGGAGAACATCACCGTTCTCATCGACACCGATGAATCCTC 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGAACGGTACGGCTTCTCCGAGGAGAACATCACCGTTCTCATCGACACCGATGAATCCTC 239
Query 182 TACTCAGCCCACTGGCAAGAACATCCGCCGCGCGCTGGCTGATCTCGTCGGATCTGCGGA 241
||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 240 TACTCAGCCTACTGGCAAGAACATCCGCCGCGCGCTTGCTGATCTCGTCGAATCTGCCGA 299
Query 242 ATCCGGCGACGTTCTTGTCGTTCATTACAGTGGACACGGTACGAGGTTGCCGGCTGAGAC 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCCGGCGACGTTCTTGTCGTTCATTACAGTGGACACGGTACGAGGTTGCCGGCTGAGAC 359
Query 302 TGGGGAAGACGATGACACTGGTTTCGACGAGTGTATTGTTCCTTGCGACATGAATCTGAT 361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGTGAAGACGATGACACTGGTTTCGACGAGTGTATTGTTCCTTGCGACATGAATCTGAT 419
Query 362 TACTGATGATGATTTCAGAGATCTTGTGGACAAAGTTCCTCAAGGTTGCAGAATGACAAT 421
||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 420 TACTGATGATGATTTTAGAGATCTTGTGGACAAGGTTCCTCCAGGTTGCAGAATGACAAT 479
Query 422 CATTTCAGACTCTTGTCACAGTGGTGGCCTTATCGATGAAGCCAAGGAGCAGATTGGAGA 481
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 480 CATTTCAGACTCTTGTCACAGTGGTGGCCTAATCGACGAAGCCAAGGAGCAGATTGGAGA 539
Query 482 GAGCACTAAGAAAGAGGCCGAGGACGAAGATGAATCTGAAGAATCTTCTTCAAGATTCGG 541
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGCACTAAGAAAGAAGCCGAGGACGAAGATGAATCTGAAGAATCTTCTTCAAGATTCGG 599
Query 542 GTTTAGGAAGTTCTTGCGCAGCAAAGTGGAAGGCGCCATCGAGTCTCGAGGGTTTCACAT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTTAGGAAGTTCTTGCGCAGCAAAGTGGAAGGCGCCATCGAGTCTCGAGGGTTTCACAT 659
Query 602 TGGAGGGAACAAGAAGGATGAAGATGAGGCCGAAGAAATCGAGACTAAGGAGATTGAGCT 661
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TGGAGGGAACAAGAAGGATGAAGATGAGGCGGAAGAAATCGAGACTAAGGAGATTGAGCT 719
Query 662 AGAAGACGGTGAAAGGATCCATGCCAAAGACAAATCTCTTCCTCTGCAGACCTTGATTGA 721
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGAAGACGGAGAAACGATCCATGCCAAAGACAAATCTCTTCCTCTGCAGACCTTGATTGA 779
Query 722 TATCCTCAAGCAGCAAACAGGGAACGATAATATCGAAGTTGGGAAAATCAGGCCAAGCCT 781
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 TATTCTCAAGCAGCAAACAGGGAATGATAATATCGAAGTTGGGAAAATCAGGCCAAGCCT 839
Query 782 TTTTGATGCGTTTGGTGATGATTCGAGCCCCAAAGTGAAGAAGTTTATGAAAGTGATCTT 841
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TTTTGATGCGTTTGGTGATGATTCGAGCCCGAAAGTGAAGAAGTTTATGAAAGTGATCTT 899
Query 842 AGGTAAGCTTCAGGCTGGAAATGGAGAAGAAGGTGGATTAATGGGAATGCTTGGGAAATT 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 AGGTAAGCTTCAGGCTGGAAATGGAGAAGAAGGTGGATTAATGGGAATGCTTGGCAAATT 959
Query 902 GGCTTCAGGGTTTCTTGAGGGTAAACTAAACGATGAAGACTATGTGAAACCCGCGATGCA 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 GGCTTCAGGGTTTCTTGAGGGTAAACTAAACGATGAAGACTATGTGAAACCCGCTATGCA 1019
Query 962 GACACACGTTGGGAGTAAAGAAGAGGTTTATGCTGGTGGATCCAGAGGTTCGGTTCCGCT 1021
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 GACACACGTTGGGAGTAAAGAAGAGGTTTATGCTGGTGGATCAAGAGGTTCGGTTCCGCT 1079
Query 1022 TCCAGACAGCGGGATACTGATCAGCGGTTGCCAAACCGATCAGACCTCTGCGGATGCGAC 1081
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 TCCAGACAGCGGGATACTGATCAGCGGTTGCCAAACCGATCAGACCTCTGCTGATGCGAC 1139
Query 1082 TCCAGCGGGGAATCCAACTGAGGCTTATGGAGCGATGAGCAATTCGATACAGAAGATATT 1141
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1140 TCCAGCGGGGAAACCAACTGAGGCTTATGGAGCGATGAGCAATTCGATACAGACGATATT 1199
Query 1142 GGAGGAGACAGACGGTGAGATATCAAACAGAGAAATGGTTACAAGGGCAAGGAAGGCATT 1201
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 GGAGGAGACAGACGGTGAGATATCAAACAGAGAAATGGTTACAAGGGCTAGGAAGGCATT 1259
Query 1202 GAAGAAGCAAGGGTTTACTCAGCAGCCAGGTTTGTATTGCCATGATGGGTATGCAAATGC 1261
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1260 GAAGAAGCAAGGGTTTACTCAGCAGCCAGGTTTGTATTGCCATGATGGTTATGCCAACGC 1319
Query 1262 TCCTTTCATCTGTTGAAAACAGAGGTTTTATTGAATG 1298
|||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCCTTTCATCTGTTGAAAACAGAGGTTTTATTGAATG 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64005694875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5