BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927355
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79360.1 | Symbols: ATOCT2, OCT2, 2-Oct | organic cation/car... 2621 0.0
> AT1G79360.1 | Symbols: ATOCT2, OCT2, 2-Oct | organic cation/carnitine
transporter 2 | chr1:29854038-29855821 REVERSE LENGTH=1784
Length=1784
Score = 2621 bits (1419), Expect = 0.0
Identities = 1553/1619 (96%), Gaps = 3/1619 (0%)
Strand=Plus/Plus
Query 6 GAAAACTCGTGCAACATGGCAGAACCAACTCAGCCGCTTCTGACCGATTCGAACTCGTCA 65
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 84 GAAAACTCGTGCAACATGGCAGAACCAACTCAGCCGCTTCTGACCGATTCCAACTCGTCA 143
Query 66 TCACCAAGATCTTTCGACGACACAATCGAGAGTTACATAGGAAGCTTTGGGTGGGCTCAG 125
||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 144 TCACCGAGATCTCTCGACGACACAATCGAGAGTTACATTGGAAGCTTTGGGTGGGCTCAG 203
Query 126 TTTCTTCAAGCGGCTTTAGTTTCATTCTCCGGTGTTTTCGACGCTCAACAAACTTTCATC 185
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 204 TTTCTTCAAGCGGCTTTAGTCTCATTCTCCGGTGTTTTCGACGCTCAACAAACTTTCATC 263
Query 186 TCTGTGTTCACAGACTCCGAACCCACGTGGCACTGCACCGACTCAAACTCGATCTGCCAT 245
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 264 TCTGTGTTTACAGACTCCGAACCCACGTGGCACTGCACCGACTCGAACTCGATCTGCCAT 323
Query 246 GAATCCATCTCCAACATCTGTATCCTCCCCAAAACCGCATGGTCTTGGGATTACTCTCCT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 GAATCCATCTCCAACATCTGTATCCTCCCCAAAACCGCATGGTCTTGGGATTACTCTCCT 383
Query 306 CACGTCTCTGTTATATCCGAATGGGGTCTCCAATGCGCCGGCTCTTTCGTCAAGGGCTTA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CACGTCTCTGTTATATCCGAATGGGGTCTCCAATGCGCCGGCTCTTTCGTCAAGGGCTTA 443
Query 366 CCGGAGAGTTCTTTCTTCGTCGGATGTTTAATCGGAGGTTTGGTTCTCTCAACACTTGCT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 CCGGAGAGTTCTTTCTTCGTCGGATGTTTAATCGGAGGTTTGGTTCTCTCAACACTTGCT 503
Query 426 GATTCTTCCTTGGGTCGTAAAAACATGTTGTTTCTCTCGTGTCTCGTGATGGCGATTTCA 485
||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||
Sbjct 504 GATTCTTCCTTGGGTCGTAAAAACATGTTGTTTCTGTCCTGTCTCGTTATGGCGATATCA 563
Query 486 ACGATGCTAACCGTTTTCTCACCAAACATTTGGGTTTACGCTGTTCTTCGATTCGTTAAT 545
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 ACGATGCTAACGGTTTTCTCACCAAACATTTGGGTTTACGCTGTTCTTCGATTCGTTAAT 623
Query 546 GGATTCGGTCGAGCGACGATAGGGACATGTGCCCTCGTGCTTTCGACGGAATTGGTTGGG 605
||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 624 GGATTTGGTCGAGCGACGATAGGGACATGTGCGCTCGTTCTTTCGACGGAATTAGTTGGG 683
Query 606 AAGAAATGGCGAGGACGAGTTGGAATCATGAGTTTCTTCGGATTCATGCTTGGATTTTTG 665
|||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||
Sbjct 684 AAGAAATGGCGAGGACGAGTAGGGATAATGAGTTTCTTCGGATTCATGCTTGGCTTTTTG 743
Query 666 TCTCTTCCATTGATGGCTTACATGAACAGAGGAAGTTCGTGGAGGATTCTCTATGTATGG 725
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||
Sbjct 744 TCTCTTCCTTTGATGGCTTACATGAACAGAGGAAGTTCTTGGAGGATTCTCTACGCATGG 803
Query 726 ACGTCGATTCCGACAATAATCTACTGCGTTCTTGTTCGATTTTTCGTTTGTGAGTCTCCG 785
|| |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 804 ACTTCGATTCCAACGATAATATACTGCGTTCTTGTTCGGTTTTTCGTTTGTGAGTCTCCA 863
Query 786 AGGTGGCTTTTCGTTAGAGGTCGTAAAGAAGAAGCTATTTCGATTCTCAAAAGGGTTGCT 845
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 864 AGGTGGCTTTTCGTTAGAGGCCGTAGAGAAGAAGCTATTTCGATTCTCAAAAGGGTTGCT 923
Query 846 TCGATTCCGTCGACTGATGTAAACATTGGTGGTGCAATATCTATGAGCTTTTCGAGCTTA 905
||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 924 TCGATTCCGTCTACTGATGTAAGCAGTGGTGGTGCAATATCTATGAGTTTTTCGAGCTTA 983
Query 906 CCATTTGAAGATGAGGAAGAGAAGCCTA--A-TAATGTTAACATCTTCACGACCATGAAG 962
|| |||||||| || ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 984 CCTTTTGAAGAAGATGAAGAGAAGCCTAGTACTAATGTTAACATCTTCACGACCATGAAG 1043
Query 963 ATGTTGGTAGAGAAAAGATGGGCGCTTAAGAGATTATCCGCGGTAATGGCCATTGCGTTC 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GTGTTGGTAGAGAAAAGATGGGCGCTTAAGAGATTATCCGCGGTAATGGCCATTGCGTTC 1103
Query 1023 GGGATTGGTTTGGTCTATTACGGGATGCCTTTAGCGTTATCGAATCTTGATTTCAACATC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 GGGATTGGTTTGGTCTATTACGGGATGCCTTTAGCGTTATCGAATCTTGATTTCAACATC 1163
Query 1083 TATTTAAGTGCAGCGTTTAATGCGTTGATGGATTTACCAGCGAACCTCATCACTCTTTTC 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1164 TATTTAAGTGCAGCGTTTAATGCGTTGATGGATTTACCAGCGAACCTCATCACGCTTTTC 1223
Query 1143 CTAGTTGATAAACTCAGTAGGAGAAACGCGCTTATCGGATTTACGGCTTTAGGTGGAGTC 1202
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 CTAGTCGATAAACTCAGTAGGAGAAACGCGCTTATCGGATTTACGGCTTTAGGTGGAGTC 1283
Query 1203 TCTAGCGTTCTCATATTTGCGTTACAGAATATGAGAATCGGAAACCATGGGGCGCTACAG 1262
|||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||
Sbjct 1284 TCTAGCGTTCTCATATTTGCGTTACATAATATGAGAATTGGAAACCACGGGGCGTTACAG 1343
Query 1263 CTGGCGTTAGAGCTAATCTCTTACTTTAGTGCGTGTTCCGCTTTTAACATGGAGATGATA 1322
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1344 TTGGCGTTAGAGCTAATCTCTTACTTTAGCGCGTGTTCGGCTTTTAACATGGAGATGATA 1403
Query 1323 TACACAATCGAGTTGTTTCCTACATGTGTGAGAAACTCGGCTATCGCAATGGCTAGACAG 1382
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TACACGATCGAGCTGTTTCCGACATGTGTGAGAAACTCGGCTATCGCAATGGCTAGACAG 1463
Query 1383 GCTTTGGTGCTTGGTGGGGTTTTCAGCCCTATTATGGTAGCAGCTGGTCGGAAAAACTCG 1442
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1464 GCTTTGGTGCTTGGTGGAGTTTTCAGCCCTATTATGGTAGCAGCTGGTCGGAAAAACGCG 1523
Query 1443 TTCTGGTCGTTCGGGTTGTTCGGTCTTGCTATAGGTTTGTTGGGATTGTTTGCAGTTGGA 1502
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1524 TTCTGGTCGTTCGGATTGTTTGGTCTTGCTATAGGTTTGTTGGGATTGTTTGCAGTTGGA 1583
Query 1503 TTGCCAGAGACTAGAGGGAGTGATCTATGTGACACTATGGACGAGGAAGAGTGCAAAGAT 1562
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 TTGCCAGAGACTAGAGGGAGTGATCTATGTGACACTATGGACGAGGAAGAGTGCAAAGAC 1643
Query 1563 CGACGGAGTAAAGTCGCCATTAATAGTGTGATTGCATGATATGATGAAGAATTTGAAAA 1621
|| ||||||||||||||| |||||| ||| ||||||||| ||| |||||||||||||||
Sbjct 1644 CGGCGGAGTAAAGTCGCCGTTAATAATGTCATTGCATGAAATGGTGAAGAATTTGAAAA 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80069869275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5