BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927381
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79580.1 | Symbols: SMB, ANAC033 | NAC (No Apical Meristem) ... 1814 0.0
> AT1G79580.1 | Symbols: SMB, ANAC033 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr1:29940896-29943442
REVERSE LENGTH=1534
Length=1534
Score = 1814 bits (982), Expect = 0.0
Identities = 1109/1167 (95%), Gaps = 22/1167 (2%)
Strand=Plus/Plus
Query 1 CTTAAAGAAGAGTACGGATAATGGAGATAGGGTCGTCATCCACAGTGGCCGGAGGAGGAC 60
|||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 275 CTTAAAGAAGAGTAAGGATAATGGAGATAGGGTCGTCATCCACGGTGGCTGGCGGAGGAC 334
Query 61 AGCTTTCTGTGCCTCCGGGATTCCGGTTTCATCCAACGGAGGAGGAGCTTCTTTACTATT 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 AGCTTTCGGTGCCTCCGGGATTCCGGTTTCATCCAACGGAGGAGGAGCTTCTTTACTATT 394
Query 121 ACCTCAAGAAGAAGGTTTCTTATGAACCAATTGATTTAGATGTAATTAGAGAAGTTGATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 ACCTCAAGAAGAAGGTTTCTTATGAACCAATTGATTTAGATGTAATTAGAGAAGTTGATC 454
Query 181 TCAACAAGCTGGAACCTTGGGAACTTAAAGAGAAATGCAGAATCGGGTCGGGTCCTCAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TCAACAAGCTGGAACCTTGGGAACTTAAAGAGAAATGCAGAATCGGGTCGGGTCCTCAAA 514
Query 241 ACGAGTGGTAtttttttAGCCACAAGGACAAGAAATATCCGACTGGGACTAGAACGAACC 300
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 515 ACGAGTGGTATTTCTTTAGCCACAAGGACAAGAAATATCCGACTGGGACCCGAACGAACC 574
Query 301 GGGCGACTGCAGCCGGGTTCTGGAAAGCTACTGGTAGAGACAAATCCATACATCTAAACA 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 575 GGGCGACAGCAGCCGGGTTCTGGAAAGCTACTGGTAGAGACAAATCCATACATCTCAACA 634
Query 361 GCTCCAAGAAGATTGGACTTCGTAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GCTCCAAGAAGATTGGACTTCGTAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATG 694
Query 421 GCCAAAAAACGGAATGGATCATGCACGAATATCGCTTGGATGATAACGAAAACGAAATTC 480
|||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 695 GCCAAAAAACCGAATGGATCATGCACGAATATCGCTTGGACGATAGCGAAAACGAAATTC 754
Query 481 AGGAAGATGGGTGGGTTGTATGCAGAGTGTtcaagaagaagaatcatttcagaggatttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 AGGAAGATGGGTGGGTTGTATGCAGAGTGTTCAAGAAGAAGAATCATTTCAGAGGATTTC 814
Query 541 atcaagaacaagagcaagatcatcatcatcatcatcaccaatacataagcaccaacaatg 600
| |||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 815 ACCAAGAACAAGAGCAAGATCATCATCATCATCA-C-C-AATACATAAGCACCAACAATG 871
Query 601 atcatgatcaccatcatcacatTGACTCCAATTCAAACAATCAAACTTCTTTGATCCCAC 660
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||
Sbjct 872 ATCATGATCACCATCATCACATTGACTCCAATTCAAACAATCATTCTCCTTTGATCCTAC 931
Query 661 ATCCTCTAGATCATCATCACCACCATCATCACATTGGACGACAAATCCACATGCCATTAC 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 ATCCTCTGGATCATCATCACCACCATCATCACATTGGACGACAAATCCACATGCCATTAC 991
Query 721 ATGAGTTTGCAAACACTCTGAACCATGGCTCAATGCATCTACCTCAGCTCTTTAGCCCTG 780
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 992 ATGAGTTTGCAAACACTCTGAGCCATGGCTCAATGCATCTACCTCAGCTCTTTAGCCCTG 1051
Query 781 ACTCAGCTGCAGCAGCGGCTGCGGCAGCAGCATCAGCCCAACCGTTTGTGTCATCAATCA 840
||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1052 ACTCAGCTGCAGCGGCGGCTGCCGCAGCAGCATCAGCCCAACCATTTGTGTCGCCAATCA 1111
Query 841 ACACAACAGACATTGAATGCTCACAGAATCTACTGAGGCTGACTTCTAACAACAACTATG 900
|||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1112 ACACTACGGACATTGAATGTTCACAGAATCTACTGAGGTTGACTTCTAACAACAACTATG 1171
Query 901 GTGGAGACTGGTCGTTTCTGGACAAGCTTCTCACTACAACCAACATGAATCAGCAACA-- 958
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1172 GTGGAGACTGGTCGTTTCTGGACAAGCTTCTCACTACAGGCAACATGAATCAGCAACAGC 1231
Query 959 AG-------TGCAGAACCATCAAGCAAAATGTTTTGGTGACTTGAGTAACAACGATAATA 1011
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 AGCAGCAAGTGCAGAACCATCAAGCAAAATGTTTTGGTGACTTGAGTAACAACGATAATA 1291
Query 1012 ACGACCAGGCTGTTACTCATGATCATTTGGGTAACAACAATGGTGGTTCTTCGTCATCTC 1071
|||| ||||||| | |||| | | |||||||||||||||||||||||| |||||||
Sbjct 1292 ACGATCAGGCTG--A-TCAT--T--T--GGGTAACAACAATGGTGGTTCTTCTTCATCTC 1342
Query 1072 CGGTTAATCAAAGGTTTCCGTTTCACTACTTGGGAAACGATGCTAACCTTCTCAAGTTCC 1131
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1343 CAGTTAATCAAAGGTTTCCGTTTCACTACTTGGGAAACGACGCTAATCTTCTCAAGTTCC 1402
Query 1132 CAAAGTAGATCAATCGGATTTGATTGA 1158
|||||||||||||||||||||| ||||
Sbjct 1403 CAAAGTAGATCAATCGGATTTG-TTGA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5