BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927383

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80700.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  82.4    3e-15
  AT1G80980.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  82.4    3e-15


> AT1G80700.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT1G80980.1); Has 476 
Blast hits to 340 proteins in 85 species: Archae - 2; Bacteria 
- 44; Metazoa - 84; Fungi - 36; Plants - 40; Viruses - 0; 
Other Eukaryotes - 270 (source: NCBI BLink). | chr1:30331922-30333400 
FORWARD LENGTH=868
Length=868

 Score = 82.4 bits (44),  Expect = 3e-15
 Identities = 48/50 (96%), Gaps = 0/50 (0%)
 Strand=Plus/Plus

Query  83   GTTTGATTGGCATGTGGTGCAATTCATCAACGTCTGCTTGCCATCTCTAG  132
            ||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct  299  GTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAG  348


> AT1G80980.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT1G80700.1); Has 477 
Blast hits to 341 proteins in 85 species: Archae - 2; Bacteria 
- 44; Metazoa - 78; Fungi - 37; Plants - 42; Viruses - 0; 
Other Eukaryotes - 274 (source: NCBI BLink). | chr1:30422058-30424087 
REVERSE LENGTH=1418
Length=1418

 Score = 82.4 bits (44),  Expect = 3e-15
 Identities = 48/50 (96%), Gaps = 0/50 (0%)
 Strand=Plus/Plus

Query  83   GTTTGATTGGCATGTGGTGCAATTCATCAACGTCTGCTTGCCATCTCTAG  132
            ||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct  890  GTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAG  939



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19654689859


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5