BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927384
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural resist... 1434 0.0
AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion trans... 878 0.0
> AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural resistance-associated
macrophage protein 1 | chr1:30372879-30375696
REVERSE LENGTH=1838
Length=1838
Score = 1434 bits (776), Expect = 0.0
Identities = 982/1082 (91%), Gaps = 12/1082 (1%)
Strand=Plus/Plus
Query 270 ATCGGAACCGCTTTTGCTCTGAACATGCTCTTTAGCATGCCGGTATGGATTGGTGTGCCT 329
|||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| | |
Sbjct 476 ATCGGAACAGCTTTTGCTCTGAACATGCTCTTTAGCATACCGGTGTGGATCGGTGTTCTT 535
Query 330 CTGACAGGCTTAAGTACTATGGTTCTTCTCAAAATTCAAAAATACGGGGTGAGAAAGTTG 389
||||||||||||||||| || |||||||| | ||||||||||||||||||||||| ||
Sbjct 536 CTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGGGTGAGAAAGCTG 595
Query 390 GAGTTCTTGATTGCAATTCTTGTATTCACAATGGCTATAAGCTTCTTTGTTGAGCTTCAC 449
||||||||||| || ||||||| |||||||| || ||| |||||||||||||||||||
Sbjct 596 GAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATATGCTTCTTTGTTGAGCTTCAT 655
Query 450 TACTCAAAGCCCGACCCAGGAGAAATCCTACATGGTCTCTTTGTTCCTCAACTGAAAGGA 509
||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 656 TACTCAAAGCCAGACCCAGGAGAAGTCCTACATGGTCTCTTTGTTCCTCAACTTAAAGGA 715
Query 510 AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCGCATAATCTC 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCGCATAATCTC 775
Query 570 TTCCTCCACTCGGCCTTGGTTCTCTCTAG-AAATATCCCTCGTTCCACTACTGGCATCAA 628
|||||||||||||||||||||||||| || ||| |||||||||||| || |||| |||||
Sbjct 776 TTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAA-ATCCCTCGTTCCGCTTCTGGTATCAA 834
Query 629 GAAAGCTTGCAGGTTTTACTTGATAGAAAGCGGATTGGCTCTAATGGTGGCATTTCTCAT 688
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 835 GGAAGCTTGCAGGTTTTACTTGATAGAAAGTGGATTGGCTCTAATGGTGGCCTTTCTCAT 894
Query 689 AAACGTCTCTGTGATATCAGTAAGTGGTGCTGTTTGTAATGCCCCGAACTTAAGCCCTGA 748
|||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 895 AAACGTCTCTGTAATATCAGTAAGCGGGGCTGTTTGTAATGCCCCCAACTTAAGCCCTGA 954
Query 749 AGATCGAGCTAATTGTGAGAATTTGGACTTAAACAAGGCTTCGTTTCTGCTCCGGAATGT 808
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 955 AGATCGAGCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGGAACGT 1014
Query 809 TTTGGGGAAATGGAGCTCAAAGCTATTTGCGATTGCGCTTCTTGCTTCTGGTCAGAGCTC 868
| |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1015 TGTGGGAAAATGGAGCTCAAAGCTATTTGCAATCGCGCTTCTTGCTTCTGGTCAGAGCTC 1074
Query 869 GACGATAACAGGAACTTATGCTGGACAATACATAATGCAAGGATTTCTTGACCTAAAACT 928
||||||||| |||||||||||||||||||| ||||||| || |||||||| || | |||
Sbjct 1075 GACGATAACCGGAACTTATGCTGGACAATATGTAATGCAGGGCTTTCTTGATCTCAGACT 1134
Query 929 CAAGCCATGGCTCAGAAACTTACTAACACGATGTTTAGCTATAATCCCGAGTCTAATCGT 988
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1135 CGAGCCATGGCTCAGAAACTTACTAACAAGATGTTTAGCTATAATCCCGAGTCTAATTGT 1194
Query 989 TTCTCTCATTGGTGGTTCTGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGATGATCTT 1048
| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1195 TGCTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGATGATCTT 1254
Query 1049 GTCCTTTGAGCTCCCGTTCGCGCTGGTTCCCCT-CTTGAAATTTACAAGCTGCAAAACCA 1107
||||||||||||||||| ||| ||||||| || || ||||| ||||| ||||||||||
Sbjct 1255 ATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCTC-AAATTCACAAGTTGCAAAACCA 1313
Query 1108 AGATGGGTTCACACGTCAACTCAATCTG-GATCACAGCTTTGACTTGGATTATTGGATTA 1166
||||||||||||| |||||| |||| | ||| ||||||||||||||| | ||||| |
Sbjct 1314 AGATGGGTTCACATGTCAACCCAATG-GCGATTACAGCTTTGACTTGGGTCATTGG-TGG 1371
Query 1167 CTCA-TCATGGGAATAAACATATACTATATAGTAACCAGTTTCATCAAGCTGCTTCTCCA 1225
| | ||||||||||||||||||||||| |||||| |||||||||||| |||||| ||||
Sbjct 1372 TTTAATCATGGGAATAAACATATACTATCTAGTAAGCAGTTTCATCAAACTGCTTATCCA 1431
Query 1226 TAGTCATATGAAGCTTGTCGC-CGTCATCTTCTGTGGAATTATTGGGTTCGCAGGTATTG 1284
||||||||||||||| || | |||| |||||||||||||| ||||||||||||| ||||
Sbjct 1432 CAGTCATATGAAGCTTATC-CTCGTCGTCTTCTGTGGAATTCTTGGGTTCGCAGGCATTG 1490
Query 1285 CTATCTATTTAGC-GTCCATAGCTTACCTTGTCTTGAGGAAAAACAGAGAAGCCACTCCT 1343
|| |||||||||| | ||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 1491 CTCTCTATTTAGCCG-CCATAGCTTACCTTGTCTTCCGGAAAAACAGAGTAGCCACTTCT 1549
Query 1344 CT 1345
||
Sbjct 1550 CT 1551
> AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion transporter
6 | chr1:5481665-5485082 REVERSE LENGTH=2137
Length=2137
Score = 878 bits (475), Expect = 0.0
Identities = 889/1086 (82%), Gaps = 40/1086 (4%)
Strand=Plus/Plus
Query 268 TAATCGGAACCGCTTTTGCTCTGAACATGCTCTTTAGCATGCCGGTATGGATTGGTGTGC 327
|||| ||||| || |||||| | |||||||| || | || ||||| ||||||||||| |
Sbjct 414 TAATTGGAACAGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTC 473
Query 328 CTCTGACAGG-CTTAAGTACTA-TGGTTCTTCTCA-AAATTCAAAAATACGGGGTGAGAA 384
||| ||||| ||| ||||| | || ||||||| | | ||||| |||| ||| | ||||
Sbjct 474 TTCTCACAGGACTT-AGTAC-ATTGATTCTTCT-AGCACTTCAACAATATGGGATTAGAA 530
Query 385 AGTTGGAGTTCTTGATTGCAATTCTTGTATTCACAATGGCTATAAGCTTCTTTGTTGAGC 444
|| | ||||||||||| || ||||||| ||||| || || || |||||||||||||||
Sbjct 531 AGCTCGAGTTCTTGATCGCTTTTCTTGTGTTCACCATTGCCCTATGCTTCTTTGTTGAGC 590
Query 445 TTCACTACTCAAAGCCCGACCCAGGAGAAATCCTAC-ATGGTCTCTTTGTTCCTCAACTG 503
|||| ||||||||||| |||||| |||| |||| | ||||||||||||||||||| ||
Sbjct 591 TTCATTACTCAAAGCCAGACCCAAAAGAAGTCCT-CTATGGTCTCTTTGTTCCTCAGTTG 649
Query 504 AAAGGAAATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCGCAT 563
|| || ||||||||||||||| | || || ||| | ||||| |||||||||||||||||
Sbjct 650 AAGGGTAATGGTGCAACTGGTTTAGCGATATCTCTCCTCGGTGCCATGGTTATGCCGCAC 709
Query 564 AATCTCTTCCTCCACTCGGCCTTGGTTCTCTCTA-GAAATATCCCTCGTTCCACT-ACTG 621
|||||||| |||||||| || || |||||||||| |||| || ||||||| || | || |
Sbjct 710 AATCTCTTTCTCCACTCAGCTTTAGTTCTCTCTAGGAAA-ATTCCTCGTT-CAGTAACCG 767
Query 622 GCATCAAGAAAGCTTG-CAGGTTTTACTTGATAGAAAGCGGATTGGCTCTAATGGTGGCA 680
|||||||| ||||||| | ||| ||||||||||||||||||||| || || |||||||||
Sbjct 768 GCATCAAGGAAGCTTGTC-GGTATTACTTGATAGAAAGCGGATTAGCACTTATGGTGGCA 826
Query 681 TTTCTCATAAACGTCTCTGTGATATCAGTAAGTGGTGCTGTTTGTAATGCC-CCGAACTT 739
|||||||| || ||||||||||||||||| |||||||| |||||||||||| | | | ||
Sbjct 827 TTTCTCATCAATGTCTCTGTGATATCAGTGAGTGGTGCAGTTTGTAATGCCTCAG-ATTT 885
Query 740 AAGCCCTGAAGATCGAGCTAATTG-TGAGAATTTGGACTTAAACAAGGCTTCGTTTCTGC 798
|| || ||||||||||||| ||| || |||||||||||||||| ||||| |||||||
Sbjct 886 GAGTCCAGAAGATCGAGCTAGTTGCCAAG-ATTTGGACTTAAACAAAGCTTCATTTCTGC 944
Query 799 TCCGGAATGTTTTGGGGAAATGGAGCTCAAAGCTATTTGCGATTGCGCTT-CTTGCTTCT 857
| || || ||| |||| ||||||||||||||||||||||| |||||| || ||||||||
Sbjct 945 TACGTAACGTTGTGGGTAAATGGAGCTCAAAGCTATTTGCAATTGCG-TTGCTTGCTTCC 1003
Query 858 GGTCAGAGCTCGACGATAACAGGAACTTATGCTGGACAATACATAATGCAAGGATTTCTT 917
|||||||| || || ||||| ||||| ||||||||||||||| | ||||| || ||||||
Sbjct 1004 GGTCAGAGTTCAACCATAACCGGAACATATGCTGGACAATACGTTATGCAGGGGTTTCTT 1063
Query 918 GACCTAAAACTCA-AGCCATGGCTCAGAAACTTACTAA-CACGATGTTTAGCTATAATCC 975
|| ||| ||| | | ||||||||||||||||| |||| || |||| || ||||||||||
Sbjct 1064 GATTTAAGACT-AGAACCATGGCTCAGAAACTTCCTAACCA-GATGCTTGGCTATAATCC 1121
Query 976 CGAGTCTAATCGTTTCTCTCATTGGTGGTTCTGCTGGAGCCGGAAAGTTAATCATCATTG 1035
| ||| | |||||| || | || ||||| || ||||||||||||||||||||||||||||
Sbjct 1122 CAAGTTTGATCGTTGCTTTGATAGGTGGCTCAGCTGGAGCCGGAAAGTTAATCATCATTG 1181
Query 1036 CCTCGATGATCTTGTCCTTTGAGCTCCCGTTCGCGCTGGTTCCC-CT-CTTGAAATTTAC 1093
||||||||||||| |||||||| ||||| || || | || ||| || || ||||| ||
Sbjct 1182 CCTCGATGATCTTATCCTTTGAACTCCCATTTGCTTTAGT-CCCACTTCTC-AAATTCAC 1239
Query 1094 AAGCTGCAAAACCAAGATGGGTTCACACGTCAACTCAATCTG-GATCACAGCTTTGACTT 1152
|||| | |||||||| ||||| ||||||| ||| ||| | || ||| || | ||||||
Sbjct 1240 AAGCAGTAAAACCAAAATGGGCTCACACGCCAATTCACT-TGTGATTTCATCGGTGACTT 1298
Query 1153 GGATTATTGGATT-ACTCATCATGGGAATAAACATATACTATATAGTAACCAGTTTCATC 1211
|||| ||||| | ||| || ||||| |||||||| |||||| | |||| ||| ||||||
Sbjct 1299 GGATAATTGG-TGGACTTATTATGGGTATAAACATTTACTATCTTGTAAGCAGCTTCATC 1357
Query 1212 AAGCTGCTTCTCCATAGTCATATGAAGCTTGTCGCCGTCATCTTCTGT-GGAATTATTGG 1270
||| |||||||||||||||| ||||| ||||| ||| | | |||| | ||| || ||||
Sbjct 1358 AAGTTGCTTCTCCATAGTCACATGAACCTTGTAGCCATTGTTTTCT-TAGGAGTTCTTGG 1416
Query 1271 GTTCGCAGGTATTGCTATCT-ATTTAGC-GTCCAT-AGCTTACCTTGTCTTGAGGAAAAA 1327
||| |||| ||||| | || | ||||| | |||| || |||||||||| | | |||||
Sbjct 1417 ATTCTCAGGCATTGCCA-CTTACTTAGCTG-CCATCAG-TTACCTTGTCCTCCGTAAAAA 1473
Query 1328 CAGAGA 1333
||||||
Sbjct 1474 CAGAGA 1479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70130161365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5