BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927392

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79660.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   488    1e-137


> AT1G79660.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G16170.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr1:29975863-29976773 FORWARD LENGTH=603
Length=603

 Score =  488 bits (264),  Expect = 1e-137
 Identities = 300/317 (95%), Gaps = 4/317 (1%)
 Strand=Plus/Plus

Query  6    GGTCTTTTAGAAGTTATGGTTCTTGATGGGATTGTATCATCACCATTGCGGAGGCCACAT  65
            ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  109  GGTCTTTTAGAAGATATGGTTCTTGATGGGATTGTATCATCACCATTACGGAGGCCACAT  168

Query  66   GCTCTAAAGAAGCAATGGGATGACTTGGGTAGCTGCTCCT-CTGTTGTCCAGAGGCATCG  124
            ||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct  169  GCTCTTAAGAAGCAATGGGATGACTTGGGTAGCTGCTC-TACTGTTGTCCAGAGGCATCG  227

Query  125  GTTCCTTTTGACCGCTATGCTTCTTTTGGCATTCCTCTGCACCATTTATATCTACTTTGC  184
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  228  TTTCCTTTTGACTGCTATGCTTCTTTTGGCATTCCTCTGCACCATTTATATCTACTTTGC  287

Query  185  TGTCACCCTAGGCGCTAGGCACTTGTCT-TGTTCAGGGATGACTGGCAAAGACAAGGCAA  243
             ||||| ||||||||||||||||||| | || |||||||||||||| |||||||||||||
Sbjct  288  CGTCACACTAGGCGCTAGGCACTTGT-TGTGCTCAGGGATGACTGGAAAAGACAAGGCAA  346

Query  244  TGTGTCAAATGGAACACGTCCAAGCCAGTTTCTCCAAAGGAAAACTGAAATTCTTGTAGA  303
            ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct  347  TGTGTCAAATGGAACACATCCAAGCCAGTTTCTCCAACGGAAAACTGAAATTCTTCTAGA  406

Query  304  CTGTCAGCCTAAGCTGA  320
             ||||||||||||||||
Sbjct  407  GTGTCAGCCTAAGCTGA  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14979789202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5