BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927402
Length=2734
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80930.1 | Symbols: | MIF4G domain-containing protein / MA3... 4266 0.0
> AT1G80930.1 | Symbols: | MIF4G domain-containing protein / MA3
domain-containing protein | chr1:30405432-30409710 REVERSE
LENGTH=3256
Length=3256
Score = 4266 bits (2310), Expect = 0.0
Identities = 2607/2748 (95%), Gaps = 29/2748 (1%)
Strand=Plus/Plus
Query 1 TTTGTACTATTTTCTCATCCATGGGTAGGCACGAATACGATAGTTCCTCCgaggaagaag 60
||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 192 TTTGTACTACTTTCTCATCCATGGGTAGGCACG-----G-TAGTTCCTCCGACGAAGAAG 245
Query 61 agagagctagaagaagggataggagaagacgagagagaagCCCAGATGTTAGACGATCGA 120
|||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 246 AGAGAGTTAGAAGAAGGGATAGGAGAAGACGAGAGAGAAGCCCTGATGTTAGAAGATCGA 305
Query 121 GGACGGAGACAGATGATGTTGCTCGTCGTGTTAGGGTTTCTGATGATGAGGACCATAAGA 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 306 GGACTGAGACAGATGATGTTGCTCGTCGTGTTAGGGTTTCTGATGATGAGGACCGTAAGA 365
Query 181 GCTCGCGACGAGATCTTGAGATTGCTGG---TG--G-TGA----GA-GG-CGCCGTGGAG 228
|||||||||||||||||||||||| ||| || | ||| || || ||||||||||
Sbjct 366 GCTCGCGACGAGATCTTGAGATTGGTGGTACTGTCGCTGATGGTGAGGGACGCCGTGGAG 425
Query 229 ATAAGGT---TAGAAAAGAGACTTCTTCTGATGAGGAATTATCCAGGCGGTCGAGAAAGG 285
||||||| ||||||||||||||| ||||||||||||| | || |||||||||||||
Sbjct 426 ATAAGGTCAGAAGAAAAGAGACTTCTGATGATGAGGAATTAGCTAGACGGTCGAGAAAGG 485
Query 286 ATCGGAAAGAAGTAAACTCCGGTTCTGAGGATGATAGAGGTaaaaaaaTTGAGGTAGATA 345
|||| ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 486 ATCGAAAAGAAGCGAACTCTGGTTCTGAGGATGATAGAGGTAAAAGAATTGAGGTAGATA 545
Query 346 GTGATGCTGATGGTGAGAGGAGGGTGAGTAAGGGGAAAAATAAGGATAGAGTTAGAGCTG 405
|||||| ||||||||||||||| |||| |||||||| ||||| |||||||||||||||||
Sbjct 546 GTGATGGTGATGGTGAGAGGAGAGTGAATAAGGGGAGAAATACGGATAGAGTTAGAGCTG 605
Query 406 GCACTTCTTCTGGTGAAGAAGCAGATGATTCGAAGGGGAATAAAAAGGAAACTATGGAGG 465
||||||||||| ||||| | |||||||| |||||||||||| |||||| | |||||||
Sbjct 606 ACACTTCTTCTGATGAAG-A--AGATGATTTGAAGGGGAATAAGAAGGAACCGATGGAGG 662
Query 466 TTGAAGAGGATTACGGTAGGAGTGGAAGGCGGAGAAGCCCCAAAGTCATGGAGAAACATG 525
|||| || ||||||||| |||| |||||| | |||||||||||||||||||||||||| |
Sbjct 663 TTGATGATGATTACGGTCGGAGAGGAAGGAGAAGAAGCCCCAAAGTCATGGAGAAACAGG 722
Query 526 GTAGAGAGAGAAGTCATAGGGGTAGTAGAGTCATAGCTGATAAACCTTCTGATGAAGAAG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 723 GTAGAGAGAGAAGTCATAGGGGTAGTAGAGTCATAGCTGATAAACCTTCTGATGAGGAAG 782
Query 586 ATGGTAGGCAGAGGAGCAGGGGAGGTAGGCGTGAAAGCGAGAGGAAACGCAGGGATCATC 645
||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 783 ATGATAGGCAGAGGAGCAGGGGAGGTAGGCGAGAAAGCCAGAGGAAACGCAGGGATCATC 842
Query 646 GAGCATCTGACGACGACGAGGAAGGTGAGATTAGGAGTGAGAGAAAAGGAAAAGAGAGGA 705
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 843 GAGCATCTGACGACGATGAGGAAGGTGAGATTAGGAGTGAGAGAAGAGGAAAAGAGAAGA 902
Query 706 ATGATAGAGGTAATGAAGGTCTCTTAAAGAGGGATCGGAGGGAGAGAGACTTGACTGTTG 765
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 903 ATGATAGAGGTAGTGAAGGTCTCTTAAAGAGGGATCGGAGGGAGAGAGACTTGACTGATG 962
Query 766 GACACGAGAATGGGAGTCGGCGTAGGG-AAGTTGAAAGGCAAGAAAGGAGTCGGAGGGAT 824
| || |||||||||||||||||||||| ||| |||||| |||| ||||||||||||||
Sbjct 963 GGCATGAGAATGGGAGTCGGCGTAGGGAAAG-TGAAAGAAAAGATAGGAGTCGGAGGGAC 1021
Query 825 GATGGAGTTAGAGATGAAAAAGAAAGGAGACACAATTATAGATATGATGATAGTCAAAGA 884
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1022 GATGGAGTTAGAGATGAAAAAGAAAGGAGACACAATGATAAATATGATGATAGTCAAAGA 1081
Query 885 GACAAGGTGAGAAAGGAAGATAGCAGGAAAAGGG-A-AG-AGAAGATTGAGTTTCCAAAG 941
|||||| ||||||||||||||||||||||||||| | || ||||||||||| ||||||||
Sbjct 1082 GACAAGTTGAGAAAGGAAGATAGCAGGAAAAGGGAAGAGAAGAAGATTGAGGTTCCAAAG 1141
Query 942 CCCAAGCTGGCAGAACTCAATCCATCTGAGAACAATGCTATGGCCTTGGGAAAAACAGGA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CCCAAGCTGGCAGAACTCAATCCATCTGAGAACAATGCTATGGCCTTGGGAAAAACAGGA 1201
Query 1002 GGAGTTTATATTCCTCCGTTCAAGCTAGCACGCATGATGAAGGAGGTGGAAGATAAGAGC 1061
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1202 GGAGTTTATATTCCTCCGTTCAAGCTAGCACGCATGATGAAGGAGGTGGAAGATAAAAGC 1261
Query 1062 AGCGTAGAGTATCAACGGCTTACATGGGATGCTCTCCGTAAAAGTATTAATGGGCTCGTG 1121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 AGCGTAGAGTATCAACGGCTTACATGGGATGCTCTCCGTAAAAGTATTAATGGGCTCGTC 1321
Query 1122 AATAAGGTTAATGCAAGCAACATCAAGAACATAATCCCTGAACTGTTTGCTGAAAATCTC 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 AATAAGGTTAATGCAAGCAACATCAAGAACATAATCCCTGAACTGTTTGCTGAAAATCTC 1381
Query 1182 ATCAGAGGAAGGGGACTTTTCTGCCGTTCATGTATGAAGTCTCAAATGGCATCTCCTGGA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 ATCAGAGGAAGGGGACTTTTCTGCCGTTCATGTATGAAGTCTCAAATGGCATCTCCTGGA 1441
Query 1242 TTCACTGATGTCTTTGCAGCCTTAGTCGCTGTTATTAATGCCAAATTCCCTGAAGTTGCT 1301
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1442 TTCACTGACGTCTTTGCAGCTTTAGTCGCTGTTATTAACGCCAAATTCCCTGAAGTTGCT 1501
Query 1302 GAACTTCTATTGAAAAGGGTCATTTTGCAGCTAAAGAGAGCGTATAAGCGTAATGACAAG 1361
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1502 GAACTTCTATTGAAAAGGGTCGTTTTGCAGCTAAAGAGAGCGTATAAGCGTAACGACAAG 1561
Query 1362 CCTCAATTGCTTGCTGCTGTAAAATTTATAGCGCATCTAGTAAACCAGCAAGTCGCTGAG 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 CCTCAATTGCTTGCTGCTGTAAAATTTATAGCGCATCTAGTAAACCAGCAAGTCGCTGAG 1621
Query 1422 GAGATCATAGCACTTGAATTAGTTGCTGTACTTCTGGAAGAGCCGACTGATGACAGTGTC 1481
||||||||||||||||| |||||| | ||||||||| ||| || ||||||||||||||
Sbjct 1622 GAGATCATAGCACTTGAGTTAGTTACCATACTTCTGGGAGACCCAACTGATGACAGTGTT 1681
Query 1482 GAGGTGGCTGTTGGGTTTGTGAGGGAGTGTGGTGCGATGCTTCAAGACGTTACACCAAAA 1541
|||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||| |
Sbjct 1682 GAGGTGGCTGTTGGGTTTGTGACGGAATGTGGTGCAATGCTTCAAGACGTTTCACCAAGA 1741
Query 1542 GGATTGAATGGGATTTTTGAGCGGTTTCGTGGTATACTGCACGAGGGAGAGATAGATAAG 1601
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1742 GGATTGAATGGGATTTTTGAGAGGTTTCGTGGTATACTGCACGAGGGAGAGATAGATAAG 1801
Query 1602 AGAGTTCAGTATTTGATAGAAAGTCTCCATGCTACTAGGAAGGCGAAATTTCAGGGACAT 1661
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1802 AGAGTTCAGTATTTGATTGAAAGTCTCTTTGCTACTAGGAAGGCGAAATTTCAGGGACAT 1861
Query 1662 CCGGCCGTTCGTCCTGAGCTAGATCTTGTTGAAGAAAAATATTCGCACGATCTCTCTCTT 1721
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1862 CCGGCCGTTCGTCCTGAGCTAGATCTTGTTGAAGAAAAATATTCGCATGATCTCTCTCTT 1921
Query 1722 AATCAAGAAATTGATCCTGAAACTGCTCTTGATGTTTTCAAACCTGATCCTGACTTCGTT 1781
|||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1922 GATCATGAAATTGATCCTGAAACTGCTCTTGATATTTTCAAACCTGATCCTGATTTCGTG 1981
Query 1782 GAGAACGAAAAGAAATATGAGGCGCTGAAGAAAGAGTTACTCGGTGACGAGGAGTCTGAG 1841
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1982 GAGAACGAAAAGAAATATGAGGCGCTGAAGAAAGAGTTACTCGGTGACGAAGAGTCTGAG 2041
Query 1842 GATGACGATGGCTCTGATGCTAGTTTAGAAGATAACGATGAGGAGGAAGATGAATCTGAT 1901
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 2042 GATGAAGATGGCTCTGATGCTAGTTCAGAGGATAACGATGAGGAGGAAGATGAGTCTGAT 2101
Query 1902 GAAGAAGATGAAGAACAAATGAGAATAAGAGACGAGACAGAGACTAATCTTGTTAATCTT 1961
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2102 GAAGAAGATGAAGAACAAATGAGAATAAGAGACGAAACAGAGACTAATCTTGTTAATCTT 2161
Query 1962 AGGAGGACAATCTACCTGACCATAATGTCCAGTGTTGATTTTGAGGAAGCAGGTCACAAA 2021
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2162 AGAAGGACAATCTACCTGACCATAATGTCCAGTGTTGATTTTGAAGAAGCAGGTCACAAA 2221
Query 2022 TTACTTAAAATTAAGCTTGAACCAGGTCAAGAGATGGAACTATGCATAATGCTCCTGGAA 2081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2222 TTACTTAAAATTAAGCTTGAACCAGGTCAAGAGATGGAACTATGCATAATGCTCCTGGAA 2281
Query 2082 TGTTGCTCTCAGGAGAGAACTTATCTGCGTTACTATGGATTGTTGGGTCAGCGTTTCTGT 2141
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2282 TGTTGCTCTCAGGAGAGAACATATCTGCGTTACTATGGATTGTTGGGTCAGCGTTTCTGT 2341
Query 2142 ATGATCAACAAAATTCATCAAGAGAATTTTGAGAAATGCTTTGTTCAGCAGTATTCCATG 2201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2342 ATGATCAACAAAATTCATCAAGAGAATTTTGAGAAATGCTTTGTTCAGCAGTATTCCATG 2401
Query 2202 ATTCATCGTCTGGAGACAAACAAATTGCGTAACGTGGCTAAGTTTTTTGCCCATTTACTG 2261
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2402 ATTCACCGTCTTGAGACAAACAAATTGCGTAACGTGGCTAAGTTTTTTGCCCATTTACTG 2461
Query 2262 GGCACAGATGCTCTCCCCTGGCATGTGCTTGCCTACATTCGGTTAACCGAGGAGGACACA 2321
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2462 GGCACAGATGCTCTCCCCTGGCATGTGCTTGCCTACATTCGATTAACCGAGGAAGACACT 2521
Query 2322 ACTTCCTCATCTCGTATCTTCATTAAGATCCTATTCCAGGAATTGTCAGAACACTTGGGG 2381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2522 ACTTCCTCATCTCGTATCTTCATTAAGATCCTATTCCAGGAATTGTCAGAACACTTGGGG 2581
Query 2382 ATTAGGCTGCTTAATGAGAGGCTTCAGGATCCAACAATGCAGGAATCACTTGAATCTATC 2441
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2582 ATTAGGCTGCTTAATGAGAGGCTTCAGGATCCAACAATGCAGGAATCACTTGAATCTATA 2641
Query 2442 TTCCCTAAGGATAATCCAAAGAACACTAGGTTTGCAATCAACTTCTTTACATCCATTGGT 2501
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2642 TTCCCTAAGGATAATCCAAAGAACACGAGGTTTGCAATCAACTTCTTTACGTCCATTGGT 2701
Query 2502 CTTGGAGGCATCACAGAGAATCTCAGAGAGTATCTGAAGAACATGCCAAGCCTCATCATG 2561
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2702 CTTGGAGGCATCACAGAGAATCTGAGAGAGTATCTGAAGAACATGCCAAGCCTCATCATG 2761
Query 2562 CAACAGCAGAAGCAAGTTGCGGAATCAGAATCAGGATCATCATCTGGATCTGACAGTTCT 2621
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2762 CAACGGCAGAAGCAAGTTGCGGAATCAGAATCAGGATCATCATCTGGATCTGACAGTTCT 2821
Query 2622 GGTTCCGAGTCTGAATCTGAGTCAGACTCATCATCTTCTTCTAGTTCGGATGAAAGCGAC 2681
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2822 GATTCCGAGTCTGAATCTGAGTCAGGCTCATCATCTTCTTCTAGTTCGGATGAAAGCGAC 2881
Query 2682 AGAGAGAAGAGGAAGCGAAGAAAAAGATCTTGAAGACTGTTCTGTTTG 2729
||||| |||||||||||||||| |||||| ||||||||||| || |||
Sbjct 2882 AGAGAAAAGAGGAAGCGAAGAAGAAGATCATGAAGACTGTTTTGCTTG 2929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135801914701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5