BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927404
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80910.1 | Symbols: | Protein of unknown function (DUF1712)... 2512 0.0
> AT1G80910.1 | Symbols: | Protein of unknown function (DUF1712)
| chr1:30400734-30403676 FORWARD LENGTH=1927
Length=1927
Score = 2512 bits (1360), Expect = 0.0
Identities = 1476/1533 (96%), Gaps = 4/1533 (0%)
Strand=Plus/Plus
Query 4 ATGAGCTCTTAGAAGCTATGGGAATGGCGTCCATGAGCTCTGGTAGTGAAAGCCTTCGTC 63
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 207 ATGAGCTCTTAGAAGCTATGGGAATGGCGTCCATGAGCTCTGGTACTGAAAGCCTTCGTC 266
Query 64 TTTGCGTGTTTGACTTAAGAAGAGGCCAACACGAAGGACAAGAACTCGACAAGATCTTGT 123
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 267 TTTGCGTGTTTGACTTAAGAAGAGGCCAACACGAAGGACAGGAACTGGACAAGATCTTGT 326
Query 124 TCTTCTATCCTCCTGATCTAACCTTCTCGACTCAGCTATCCGTTATCGGGCTCAGCGAAG 183
|||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||
Sbjct 327 TCTTCTATCCTCCTGATCTAACCTTCTCCACTCAGCTATCGGTTATAGGTCTCAGTGAAG 386
Query 184 GGCTTATCACGTTCACCAGACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAG 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GGCTTATCACGTTCACGAGACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAG 446
Query 244 AGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATATGGATGGTCATGGTTGTAG 303
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 447 AGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATGATTGTAG 506
Query 304 AGAAAAATAAGGAGATTGAAGCTGTATGGAGGATTGATGCATTGCGGAGAGTGCTTAAGG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 AGAAAAATAAGGAGATTGAAGCTGTATGGAGGATTGATGCATTGCGGAGAGTGCTTAAGG 566
Query 364 AAGTGCACTCTCTCTTTGTTATGTTTCAAGGGTCAATTAGGGCATTGCTTGAGAAAGAAC 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 AAGTGCACTCTCTCTTTGTTATGTTTCAAGGGTCAATTAGGGCATTGCTTGAGAAAGAAC 626
Query 424 CAACTGGAGGACTTATAAGATCGCACTTGTATCCATTCATCACAGACTATTTAAATGATC 483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 CAACTGGAGGACTTGTAAGATCGCACTTGTATCCATTCATCACAGACTATTTAAATGATC 686
Query 484 TTTTTGTTGGTAAGAAACATCAGTTACCTTCCTTCCGTGAAACTTTGAAAGAGCGTGGAA 543
|||| ||||| || ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 687 TTTTCGTTGGGAAAAAACAACAGTTACCTTCCTTCCGTGACACTTTGAAAGAGCGTGGAA 746
Query 544 CAGTTCAGATGCTAACTTTAGCAAGAGATGCAGCACTTGAAGTTCAGTCTCTCGTCGGAG 603
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 747 CAGTTCAGATGCTAACTTTAGCTAGAGATGCGGCACTTGAAGTTCAGTCTCTCGTCGGAG 806
Query 604 TGCTAGATTCATGTGCTGGGACTGTTCGATGCCACTCTGTGATTCTATTTCATGATCTAC 663
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 807 TGCTAGATTCATGTGCTGGGACCGTTCGATGCCACTCTGTGATTCTATTTCATGATCTAC 866
Query 664 TGGTGTCAACAACTCTCTCACCTGATGATACCGTCGACTTGTTTGCATTTTCTGTCATGA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 TGGTGTCAACAACTCTCTCACCTGATGATACCGTCGACTTGTTTGCATTTTCTGTCATGA 926
Query 724 GATTGACCACAAACGCGCTATCCTCTGGCACAAGTTCCTGGTCATATCTACGCAAGGGAT 783
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 927 GATTAACCACAAACGCGCTATCATCTGGCACAAGTTCCTGGTCATATCTACGCAAAGGAT 986
Query 784 CCG-TGACACCTCAAATATCTTCTAGATCTACCT-CGGTGCTCCCTCTTGGTTCAGGTGG 841
||| | ||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 987 CCGGTT-CACCTCAAATATCTTCTAGATCTAC-TACGGTGCCCCCTCTTGGTTCAGGTGG 1044
Query 842 TACATTGCCTTCAGGAAATGGTAGTAGCACAGGTCGTGTTATTAGACCCTTGCAGCACGA 901
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1045 TACATTGCCTTCGGGAAATGGTAGTAGCACAGGTCGTGTTATTAGACCTTTGCAGCACGA 1104
Query 902 TAAGTGGTTGAAAGGGAAAGACGGGTTTCTTGTAACTGATATTTGGGGTATAGATGCCAC 961
|||||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1105 TAAGTGGTCGAAGGGGAAAGATGGGTTTCTTGTAACTGATATTTGGGGTTTAGATGCCAC 1164
Query 962 ACCGACAATTTTGATACAGAAGACACAGGAAAGATTTTACCTTTTGACATATCAATACAA 1021
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1165 CCCGACAATTTTGATACAGAAGACACAGGAAAGTTTTTACCTTTTGACTTATCAGTACAA 1224
Query 1022 AAGTCTGACCTTGGTTCTTCTCGTGCCTACCGCTGCAATTGTTAATGGAGAGCTAGACAT 1081
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1225 GAGTCTCACCTTGGTTCTTCTCGTGCCTATCGCTGCAATTGTTAATGGAGAGCTAGACAT 1284
Query 1082 CTCATTCGTGAAGCAGCAAGTTATTGAAAACGCATCGGCAAAAATCTTGAAAGTCGAAGA 1141
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1285 CTCATTCGTGAAGCAGCAAGTTATTGAAAACGCATCGACCAAAATCTTGAAAGTCGAAGA 1344
Query 1142 GAAGCTATCGAAAGGGTGGGGCGGTGAGAACGCTTACCATGTAAGCGGTTACCGTTACTT 1201
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1345 GAAGCTATCGAAAGGGTGGGGCGGTGAGAATGCTTACCATGTAAGCGGTTACCGTTACTT 1404
Query 1202 ACTAATTGATAATGACATGGAAGTTTCCAGAGCTTCTCCGGCAGGAAAGGTAGCAACTCT 1261
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1405 ACTAGTTGATAATGACATGGAAGTTTCCAGAGCTTCTCCACCAGGAAAGGTAGCAACACT 1464
Query 1262 AGCAAAGGAGTCTTTGCTTGCACTAAACAAGCTAAGGGAAGAAGTGGATACAGAAAAGAG 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1465 AGCAAAGGAGTCTTTGCTTGCACTAAACAAGCTAAGGGAAGAAGTGGATACAGAAAAAAA 1524
Query 1322 CCGCTCGAAGCAAGAGAAAGACATGGAAATATGCATTCGAGCGAAGAACAACACGTGGGT 1381
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1525 CCGCTCGAAGCAAGAGAAAGACATGGAAATATGCATTCGAGCGAAGAACAACACATGGGT 1584
Query 1382 CATCGCGCGTCTAAACAGAGGTAAAGAGGTTTACATGGGTTTAGAGAAAGCAAGTGAAAC 1441
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1585 CATCGCGCGTCTAAACAGAGGTAAAGAGCTTTACATGGCTTTAGAGAAAGCAAGTGAAAC 1644
Query 1442 TCTTCTGGATGCTACAGACTCTGTCCAAAGATTCAGCAACAGGTACTGCAGCGGAGCATT 1501
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1645 TCTTCTTGATGCTACAGACTCTGTCCAAAGATTCAGCAACAGGTACTGCAGCGGGGCATT 1704
Query 1502 CTCCATGGATTAGATTCTGCAATTGTTTGTTTT 1534
| |||||||||||||||||||||||||||||||
Sbjct 1705 CCCCATGGATTAGATTCTGCAATTGTTTGTTTT 1737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75702421860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5