BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927425
Length=2673
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:30... 1221 0.0
> AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:30342394-30347048
FORWARD LENGTH=2593
Length=2593
Score = 1221 bits (661), Expect = 0.0
Identities = 954/1093 (87%), Gaps = 30/1093 (3%)
Strand=Plus/Plus
Query 23 ATGGCAGTGAAAAACAAACAGATGAAACGCGCTGAGCCAGAGTCAGATCTGTGTTTTGCT 82
||||||| || ||||||||| | |||||||||||||||||||||||||||||| || |||
Sbjct 1 ATGGCAGCGAGAAACAAACAAAAGAAACGCGCTGAGCCAGAGTCAGATCTGTGCTTCGCT 60
Query 83 GGGAAACCAGTGTCTGTTGTCGAGTCGATGATTCGATGGCCTCATCGCTACCCATCCAAG 142
|| |||||| |||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct 61 GGCAAACCAATGTCTGTTGTGGAGTCGACGATTCGATGGCCTCATCGCTACCAATCCAAG 120
Query 143 AAAACAAAGCTTGAAGCT--G--C----GA-CGGCGACGAAGGGTGAC-AAAAAG--GA- 189
||||||||||| ||||| | | | | || | ||||||| | |||||| ||
Sbjct 121 AAAACAAAGCTCCAAGCTCCGACCAAAAAACCTGCAAATAAGGGTGGCAAAAAAGAAGAT 180
Query 190 -AA-AG---ATAAAGCTAGCGAAACGTCACTACGAGC-AAGCTTTGGTTGATGGAGTTCT 243
|| || ||||||| ||| ||| | |||| || | ||||||||||||||||||||||
Sbjct 181 GAAGAGATAATAAAGCAAGCTAAATGCCACTTTGA-CAAAGCTTTGGTTGATGGAGTTCT 239
Query 244 CATCAACCTCAATGACGATGTCTACGTCACGGGTCTACCAGGGAAGCTGAATTTCATTGG 303
||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 240 CATCAACCTAAACGACGATGTCTATGTCACGGGTCTACCAGGGAAGCTGAAATTCATTGC 299
Query 304 AAAAGTTATTGAAATGTTCGAAGCAGATGATGGGGTGCCTTACTCTCGGATTCGATGGTT 363
||||||||| || | || ||||| |||||||||||||| || | ||| |||||||||
Sbjct 300 AAAAGTTATCGAGCTCTTTGAAGCTGATGATGGGGTGCCGTATTGTCGCTTTCGATGGTA 359
Query 364 TTA-CAGACCCGATGATACTTTGATCGAAAGATTTGCCGAACTTGTGCaaaaaaaGAGGG 422
|| | | || || |||||||| |||||||||||| || | ||||||||| |||||| |
Sbjct 360 CTATC-GGCCTGAAGATACTTTAATCGAAAGATTTTCCCACCTTGTGCAACCAAAGAGAG 418
Query 423 TGTTTCTATCAAATGTTGAGGACGATAATCCTCTCACCTGCATTTATTCGAAAGTCAACA 482
||||||| ||||||| |||| | || ||||||||||||||||| | || ||||||||||
Sbjct 419 TGTTTCTCTCAAATGATGAGAATGACAATCCTCTCACCTGCATCTGGTCAAAAGTCAACA 478
Query 483 TCGCTAAAGTCCCATTACCAAAGATTACCTCCAGAATCGAGCAAAGGGTTATTCCTCCAT 542
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 479 TCGCTAAAGTCCCATTACCTAAGATTACCTCCAGAATCGAGCAAAGGGTTATTCCTCCTT 538
Query 543 GTGACTATTACTATGATATGAAGTACGAAGTGCCATATCTGAATTTTACAAGTGCAGATG 602
|||| || ||||| ||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 539 GTGATTACTACTACGATATGAAGTACGAAGTTCCTTATCTCAACTTTACAAGTGCAGATG 598
Query 603 ATGATACTGCTGCGTCATCAACTCTTTCAAGTGATTCCGCCTCGAATTGCTTTGAAACTC 662
||| || || ||| ||||||| |||||||||||| || |||| |||||||||||||| ||
Sbjct 599 ATGGTAGTGATGCCTCATCAAGTCTTTCAAGTGACTCTGCCTTGAATTGCTTTGAAAATC 658
Query 663 TCCACAAAGATGAAAAATAT-TTATTGGATCTGTACAGTGGATGCGGAGCGATGTCCACA 721
||||||| |||||||||| | ||||||||||| |||||||| ||||||||||||||||||
Sbjct 659 TCCACAAGGATGAAAAAT-TCTTATTGGATCTATACAGTGGGTGCGGAGCGATGTCCACA 717
Query 722 GGTTTCTGCATGGGAGCTTCCATAGCAGGAGTAAAATTGATTACGAAATGGTCTGTGGAT 781
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 GGTTTCTGCATGGGAGCTTCCATATCAGGAGTAAAATTGATTACGAAATGGTCTGTGGAT 777
Query 782 ATAAATAAGTTTGCTTGTGATAGTTTTAGACATAATCATCCTGAAACAGAGGTGAGAAAT 841
|||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 778 ATAAATAAGTTTGCTTGTGATAGTCTTAAACTTAATCATCCTGAAACAGAGGTGAGAAAC 837
Query 842 GAAGCTGCAGAAGATTTTCTAATTCTCCTCAAAGAATGGAAAAGGCTCTGTGA-AAGGTT 900
||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||
Sbjct 838 GAAGCCGCAGAAGATTTTCTAGCTCTTCTCAAAGAATGGAAAAGGCTCTGTGAGAAG-TT 896
Query 901 TTCTCTCATTTCAAGCACTGAACCAATGGAATCAACTTCTGAGTTGGAAGATGAAGAAAG 960
||||||| |||||||||| |||||| ||||||||| ||||||||| |||||||||||| |
Sbjct 897 TTCTCTCGTTTCAAGCACCGAACCAGTGGAATCAATTTCTGAGTTAGAAGATGAAGAA-G 955
Query 961 T-GACGAAAATGATGACATAGATGAGGCAAGTACTGGTA-TGGAACTCTCAGCGGGAGAG 1018
| || ||||||||||||||||||||||||||||||||| || ||||| | | ||||||
Sbjct 956 TTGAAGAAAATGATGACATAGATGAGGCAAGTACTGGTGCTG-AACTCGAACCTGGAGAG 1014
Query 1019 TTTGAAGTAGAAAAGTTTGTTGGCATCGTTTTTGGAGATCCTAAAGGCACAGGGGAAAAG 1078
||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||
Sbjct 1015 TTTGAAGTAGAAAAGTTCCTTGGCATCATGTTTGGAGATCCTCAAGGCACAGGGGAAAAG 1074
Query 1079 ACACTTCATCTTA 1091
|||||||| ||||
Sbjct 1075 ACACTTCAACTTA 1087
Score = 985 bits (533), Expect = 0.0
Identities = 683/754 (91%), Gaps = 15/754 (2%)
Strand=Plus/Plus
Query 1424 GATTTACAAGTTGGACTTGTTCAAAAGGAGCTT-CTTCAATTAGACAACGCTCTTACGCT 1482
|||||||||||||||| | |||||| |||| || ||| |||| |||||||||||||||||
Sbjct 1615 GATTTACAAGTTGGACGTATTCAAATGGAG-TTCCTTAAATTGGACAACGCTCTTACGCT 1673
Query 1483 GGCTGATGCTATTAGTGACCTACCACCGGTGACAAATTCTGAGGCAAATGATGTAA-GGA 1541
|||||||||||||||||| || |||||||||||||||| || |||||||||||||| |||
Sbjct 1674 GGCTGATGCTATTAGTGATCTGCCACCGGTGACAAATTATGTGGCAAATGATGTAATGGA 1733
Query 1542 ATTATAATGATGCTGCTCCTAAGACAGATTTTGAGAACTTTATTAGCCTTAAAAGATCTG 1601
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1734 -TTATAATGATGCTGCTCCTAAGACAGAGTTTGAGAACTTTATTAGCCTCAAAAGATCTG 1792
Query 1602 AGACACTATTACCCGTATGTGGTGGAGATCCGGCACGCAGGTTGTTTGATCATCAGCCTC 1661
||||||| ||||||| || ||||||||||||| ||||||||||||||||||| || || |
Sbjct 1793 AGACACTTTTACCCGCATTTGGTGGAGATCCGACACGCAGGTTGTTTGATCACCAACCCC 1852
Query 1662 TTGAATTAAGAGATGACGACTTGGAAAGAATTTCCTACATACCAAAAAAGAAGGGGGCAA 1721
| | |||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1853 TCGTATTAGGAGATGATGACTTGGAAAGAGTTTCCTACATACCAAAACAGAAGGGGGCAA 1912
Query 1722 ATTTTCGTGATATGCCTGGTGTTTTAGTTCACAACAACAAAGCGCAACTTAA-CCTTAGG 1780
| | ||| || ||||||||||||||||||||||||||||||||| || |||| ||| |||
Sbjct 1913 ACTATCGCGACATGCCTGGTGTTTTAGTTCACAACAACAAAGCGGAAATTAATCCT-AGG 1971
Query 1781 GTGAAGCGAGCAAAGTTAAAATCTGGAAAGAATGTGGTCCCTGCTTATGCAGTTTCATTC 1840
| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1972 TTT---CGAGCAAAGTTGAAATCTGGAAAAAATGTGGTCCCTGCTTATGCAATTTCATTC 2028
Query 1841 ATAAAAGGAAAATCAAAAAAGCCTTTTGGTAGA-TTGTGGTGG-GACGAAATAGTTAACA 1898
||||||||||||||||||||||| ||||||||| || ||| || || ||||| |||||||
Sbjct 2029 ATAAAAGGAAAATCAAAAAAGCCGTTTGGTAGACTT-TGG-GGTGATGAAATCGTTAACA 2086
Query 1899 CGGTTGTGACAAGGGCAGAACCTCACAACCAGTGCGTAATCCATCCAATGCAAGAGCGTG 1958
| |||||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 2087 CTGTTGTGACAAGGGCTGAACCTCACAACCAGTGTGTAATCCATCCAATGCAAAACCGTG 2146
Query 1959 TGTTGTCTGTCCGTGAGAATGCCAGACTACAAGGGTTCCCTGATTGTTACAAGCTTTGTG 2018
|||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||| ||||
Sbjct 2147 TGTTGTCTGTTCGTGAGAATGCGAGATTACAGGGGTTCCCTGATTGTTACAAGCTCTGTG 2206
Query 2019 GCTCAATTAAGGAAAAGTACATCCAGGTTGGGAATGCAGTGGCAGTTCCTGTAGGGGTTG 2078
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2207 GAACAATTAAGGAAAAGTACATCCAGGTTGGGAATGCTGTGGCAGTTCCTGTAGGGGTTG 2266
Query 2079 CGTTAGGATATGCATTTGGTATGGCGAGTCAAGGACTGACGGATGATGAGCCTGTAATCA 2138
| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2267 CATTAGGATATGCCTTTGGTATGGCGAGTCAAGGACTGACGGATGATGAACCAGTAATCA 2326
Query 2139 AGCTGCCCTTCAAGTA-CCCTGAATGCATGCAGG 2171
||||||| |||||||| ||| |||||||||||||
Sbjct 2327 AGCTGCCATTCAAGTATCCC-GAATGCATGCAGG 2359
Score = 468 bits (253), Expect = 1e-130
Identities = 306/332 (92%), Gaps = 2/332 (1%)
Strand=Plus/Plus
Query 1093 GGGTACTGTTTACTCTGTGTGCGGTGGGCCACCC-TGCCAAGGGATCAGTGGCTATAACC 1151
||||||||| ||| | |||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 1215 GGGTACTGTCTACACAGTGTGCGGTGGGCC-CCCTTGCCAAGGGATCAGTGGGTATAACC 1273
Query 1152 GGTTTAGAAACAAACAAGCACCGCTTGAGGATAAGAAAAACCAGCAACTTTTGGTGTTTT 1211
||| ||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 1274 GGTATAGAAACAATGAAGCACCGCTTGAAGATCAGAAGAACCAGCAACTTTTGGTGTTTT 1333
Query 1212 TAGACATCATTGACTTCCTCAAGCCAAGTTACGTGCTTATGGAAAATGTTGTAGACCTTC 1271
||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1334 TAGACATCATTGACTTCCTCAAGCCAAACTATGTGCTGATGGAAAATGTTGTAGACCTTC 1393
Query 1272 TTAGGTTTTCAAAGGGTTACCTGGCACGTCATGCTGTGGCTAGCTTTGTTGCCATGAATT 1331
|||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct 1394 TTAGGTTTTCAAAGGGTTTCCTGGCACGTCATGCTGTAGCTAGCTTTGTTGCGATGAATT 1453
Query 1332 ACCAGACGCGGTTGGGCATGATGACTGCTGGATCCTACGGTCTCCCTCAGGTTAGAAACA 1391
||||||||||||||||||||||| |||||||||| || || ||||||||| |||||||||
Sbjct 1454 ACCAGACGCGGTTGGGCATGATGGCTGCTGGATCTTATGGGCTCCCTCAGCTTAGAAACA 1513
Query 1392 GGGtttttttATGGGCCGCACAACCAACAGAG 1423
|||||||||||||||| ||||||||| |||||
Sbjct 1514 GGGTTTTTTTATGGGCTGCACAACCATCAGAG 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132741731178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5