BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927447
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26000.2 | Symbols: BRIZ2 | zinc finger (C3HC4-type RING fin... 1570 0.0
AT2G27160.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 106 7e-22
> AT2G26000.2 | Symbols: BRIZ2 | zinc finger (C3HC4-type RING finger)
family protein | chr2:11081302-11085350 FORWARD LENGTH=1746
Length=1746
Score = 1570 bits (850), Expect = 0.0
Identities = 922/958 (96%), Gaps = 0/958 (0%)
Strand=Plus/Plus
Query 83 GGCAAGCGTTTCCGGTGAATCGTCTCTGTCCGATATGACTCAGACAGTTCATTTTTCATC 142
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||
Sbjct 102 GGCAAGCGTTTCCGGTGAATCCTCTCTCTCCGATATGATTCAGACAGTTCATTTTTCCTC 161
Query 143 TGGAAACCCTAGAATCGGCGAGACTCGCGGGGTCATGCATCTATTTTCCGACGATGCCGT 202
|||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||
Sbjct 162 TGGAAACCCTAGAATCGGCGAGACTCGCGGTGTCATGCATCTAATTTCCGACAATGCTGT 221
Query 203 TTCGTCGTCTTCTTCCTCCTCCTCCTTGAATCTCCCTATTGGAAGGAACCCTCTCGTTTG 262
|||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 222 TTCGTCATCTTCTTCTTCCTCCTCCTCGAATCTCCCTATTGGAAGGAACCCTCTCGTTTG 281
Query 263 CGTTCTTGGGGTGCCCAACCACATGACATATGCAGATTTTTGCCACTTCTGCGGCTCCTT 322
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 282 CGTTCTTGGGGTGCCCAACCACATGACATATGCAGATTTTTGCCAGTTCTGCGGCTCCTT 341
Query 323 CATTCAACACATACTGGAGATGCGAACGGTCAGGAACGATGGGATTGAAAATCGATACAG 382
|||||| ||||||||||| |||||||| |||||||| |||| ||||||||| |||||||
Sbjct 342 CATTCAGCACATACTGGATATGCGAACCGTCAGGAATGATGACATTGAAAATAGATACAG 401
Query 383 CATTTTGATAAGGTTCGATAGTCAGGAATCTACCGATACATTCTACCAGCATTTTAGAGG 442
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 402 CATTTTGATAAGGTTTGATAGTCAGGAATCTACCGATACATTCTTCCAGCATTTCAGAGG 461
Query 443 GAAACAATTCAACTCTCTGGAGGAAGATGTCTGTCACCTTCTTTTTACTCTTGATGTTCA 502
|||||| |||||||||||||| ||||||||||||| ||| |||||| |||||||||||||
Sbjct 462 GAAACAGTTCAACTCTCTGGACGAAGATGTCTGTCGCCTGCTTTTTGCTCTTGATGTTCA 521
Query 503 GTTTACCGGTTATAGTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GTTTACCGGTTATAGTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGA 581
Query 563 GCAACCTACTTGCCCAGTTTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCAC 622
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 582 GCAACCTACTTGCCCAGTGTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCAC 641
Query 623 AACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTG 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 AACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTG 701
Query 683 CCCAGTTTGTCGATATTGCCAACAGCAATCTGAAAATTCAGTATGTTGTATTTGCCAAAC 742
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 702 CCCAGTTTGTCGATATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAAC 761
Query 743 AACGGAAAATCTCTGGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGA 802
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 AACGGAGAATCTCTGGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGA 821
Query 803 AGGACATGCCAGAAGGCACTGGGAGGAGACAGATCATTGTTATTCACTTGAGCTTGAAAC 862
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 822 AGGACATGCCAGAAGGCACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAAC 881
Query 863 ACAACGTGTTTGGGATTATGCTGGTGACAATTATGTTCATCGGCTTATTCAATCCAAAAC 922
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 882 ACAACGTGTTTGGGATTATGCTGGTGACAATTATGTTCACCGGCTTATTCAATCCAAAAC 941
Query 923 TGATGGCAAGCTAGTGGAGTTGAATTCTCATGGTAGGCTGAGCAAGGATGGTTGTGGAAG 982
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 942 TGATGGCAAGCTAGTGGAGTTGAATTCTCATGGAAGTCTGAGCAAGGATGGTTGTGGAAG 1001
Query 983 CTGTGAATATTCTGACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATG 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CTGTGAATATTCTGACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATG 1059
Score = 660 bits (357), Expect = 0.0
Identities = 414/440 (94%), Gaps = 9/440 (2%)
Strand=Plus/Plus
Query 1041 TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAGTCTTAGAAGCT 1100
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1114 TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCTCAGAAGCT 1173
Query 1101 GGGAGCAAGGCAATAAGCCAGAGACTGCAGAAGCTGCAGACCAGGTTTGACAGATGTTTA 1160
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1174 GCGAGCAAGGCAATAAGCCAGAGACTGCAGAAGCTGCAAACCAGGTTTGACAGATGTGTC 1233
Query 1161 AAAGAGAAGCAATTTCTTGAAGATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGG 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 AAAGAGAAGCAATTTCTTGAAGATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGG 1293
Query 1221 AGCACCAAGATTACAGAAATGGAGGAAAGGGAGAAGAAGGCAGTTCGGGTAAAAGATGAA 1280
||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||||||
Sbjct 1294 AGCACCAAGATTACAGAAATGAAAGAAAGGGAGAAGAAGGCAGTTCGGGCAAAGGATGAA 1353
Query 1281 AAGATTGAGGGCTTAGAAGAACAGCTTGGAAAACTAATGGCCCAAATGGATGGTGAGAGT 1340
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1354 AAGATTCAGGGCTTAGAAGAACAGCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGT 1413
Query 1341 GAAGTCTCAGAGACGAAAGAGGTCCAGGACGCCACTGTCTTGCCCTTGCCGACCACCAGT 1400
|||||||||||||||||||||||||||||||||||||||| | | ||||||| |
Sbjct 1414 GAAGTCTCAGAGACGAAAGAGGTCCAGGACGCCACTGTCT--C----G---ACCACCAAT 1464
Query 1401 AACTCTTCTTCTGCGTCAGGGAATGTTATACATGCAAATAAAAAGAAAAGTAACAGAAGA 1460
| ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1465 ACCTCTTCTTCTGGGGCAGGGAATGTTATACATGCAAATAAAAAGAAGAGTAACAGAAGA 1524
Query 1461 AAGGGTTAGATCAAGATTCA 1480
||||||||||||||||||||
Sbjct 1525 AAGGGTTAGATCAAGATTCA 1544
> AT2G27160.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 2 Blast hits to 2
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr2:11607432-11608416 REVERSE LENGTH=818
Length=818
Score = 106 bits (57), Expect = 7e-22
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 955 GTAGGCTGAGCAAGGATGGTTGTGGAAGCTGTGAATATTCTGACAGTGGAATGACTGATG 1014
|||| | ||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 570 GTAGTCCGAGCAAGGATGATTGTGGAAGCTGTGAATATTCTGACAGTAGAATGGCTGATG 629
Query 1015 CTCTCCTGAACAGCAAAGTGGACA 1038
||||| | ||||| ||| ||||||
Sbjct 630 CTCTCGTTAACAGAAAATTGGACA 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73443397335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5