BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927449

Length=1255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80555.1 | Symbols:  | Isocitrate/isopropylmalate dehydrogen...   544    1e-153


> AT1G80555.1 | Symbols:  | Isocitrate/isopropylmalate dehydrogenase 
family protein | chr1:30286956-30287741 FORWARD LENGTH=714
Length=714

 Score =  544 bits (294),  Expect = 1e-153
 Identities = 341/363 (94%), Gaps = 5/363 (1%)
 Strand=Plus/Plus

Query  4    AGTCTTTGTTGTACTAAATGGCGGGATTCATCCACGTCAGCAGTACCCAGTTTCCGGTTG  63
            ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  34   AGTCTTTGTTGTAGTAAATGGCGGGAGTCATCCACGTCAGCAGTACCCAGATTCCGGTTG  93

Query  64   CGTTTATGTCCGCAACCAAACGGAGCTTTAGGAGAAGAGCGTCTGTGATCAGATGTGCCG  123
            ||||||||||||||||||||| |||||||| | | ||||| |||||||||||||||||||
Sbjct  94   CGTTTATGTCCGCAACCAAACAGAGCTTTA-G-G-AGAGCTTCTGTGATCAGATGTGCCG  150

Query  124  CCAACACTCCGAAGAAACGGTACACCATCGCGGTGCTTCCCGGCGATGGCGTCGGTAACG  183
            |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  151  CCAACACTCCAAAGAAACGGTACACCATCGCGGTTCTTCCCGGCGATGGCGTCGGTAACG  210

Query  184  AAGTCATCCCAGTCGCTGTGGATGTTCTTTGTTTAGCTGGGTCTCTTGAAGGGATAGATT  243
            |||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct  211  AAGTGATCCCAGTCGCTGTTGACGTTCTTTGTTTAGCTGGGTCTCTTGAAGGGATAGATT  270

Query  244  TTAGCTTCAAGGAGTTGCCTATAGGAGGTGTTGCTTTAGATCTTGTCGGAGTTCCATTAC  303
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct  271  TTAGCTTCGAGGAGTTGCCTATAGGAGGTGTTGCTTTAGATCTTGTCGGAGTTCCACTGC  330

Query  304  CGGAGGAAACATTGA-CAAGGGCAAAACAATCAGACGCTGTTCTTCTCGGAGCTGTTGGA  362
            |  |||||||||||| || ||||||| |||||||||||| ||||||||||||||||||||
Sbjct  331  CTAAGGAAACATTGATCA-GGGCAAAGCAATCAGACGCTCTTCTTCTCGGAGCTGTTGGA  389

Query  363  TGG  365
            |||
Sbjct  390  TGG  392


 Score =  145 bits (78),  Expect = 1e-33
 Identities = 80/81 (99%), Gaps = 0/81 (0%)
 Strand=Plus/Plus

Query  364  GGCCGAAATGGGATAACAATCCGAAGCATTTGAAGCCGATAACGGCCTTGTTGCAGCTTC  423
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  465  GGCCGAAATGGGATAACAATCCCAAGCATTTGAAGCCGATAACGGCCTTGTTGCAGCTTC  524

Query  424  GTGCGGCTCTTCAAGTATTTG  444
            |||||||||||||||||||||
Sbjct  525  GTGCGGCTCTTCAAGTATTTG  545



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61696469805


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5