BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927452
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80530.1 | Symbols: | Major facilitator superfamily protein... 2723 0.0
> AT1G80530.1 | Symbols: | Major facilitator superfamily protein
| chr1:30277952-30280324 REVERSE LENGTH=2035
Length=2035
Score = 2723 bits (1474), Expect = 0.0
Identities = 1631/1708 (95%), Gaps = 6/1708 (0%)
Strand=Plus/Plus
Query 18 GAGATGACGAAACTGGGGGAAAAATCGGGAAGCAGACCACCGTGGGTGGGATTAGCGGCA 77
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GAGATGACGAAGCTGGCGGAAAAATCGGGAAGCAGACCACCGTGGGTGGGATTAGCGGCA 134
Query 78 GCCGCATGGGTTCAGGTGTCGGCGGGAAGTGGTTCGACTTTCCCGCTGTACTCCTCCGCT 137
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 135 GCCGCATGGGTTCAGGTCTCGGCGGGAAGTGGTTCGACGTTCCCGCTTTACTCCTCCGCT 194
Query 138 CTCAAATCGGTTTTGGGTTTTAGCCAGCAACAGGTCACGATCCTTGGCGTCGCTTGTGAT 197
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 195 CTCAAATCGGTTTTGGGTTTTAGCCAGCAGCAGGTCACGATCCTTGGCGTTGCTTGTGAT 254
Query 198 TTGGGGGAAAACATGGGTCTACTTCCGGGATACGCCAGTAACAAGCTTCCTCCATGGTCG 257
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 255 TTGGGTGAAAACATGGGTCTTCTTCCTGGATACGCCAGTAACAAGCTTCCTCCATGGTCG 314
Query 258 ATGCTTCTCATCGGAGCTTCCTCTTGTTTCCTCGGCTTCGGCGTTCTTTGGCTCTCCGTC 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 ATGCTTCTCATCGGAGCTTCCTCTTGTTTCCTCGGCTTCGGCGTTCTTTGGCTCTCCGTC 374
Query 318 AGCCAAATCGTTCATGGTTTACCTTTCTGGCTGCTTTTTATAGCTCTAGCTTTAGCTACC 377
||||||||||||| ||| || ||||| |||||||||||| ||||||||||||||||||||
Sbjct 375 AGCCAAATCGTTCTTGGCTTGCCTTTTTGGCTGCTTTTTGTAGCTCTAGCTTTAGCTACC 434
Query 378 AATAGCAACTCATGGTTCGGTACAGCATCTCTTGTCACCAATATGAGGAATTTTCCTATG 437
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AATAGCAACTCGTGGTTCGGTACAGCATCTCTTGTCACCAATATGAGGAATTTTCCTATG 494
Query 438 AGCCGAGGCCCTGTGGCTGGACTTCTCAAAGGTTATATCGGGATCAGTGGTGCAGCATTC 497
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 495 AGCCGAGGCCCTGTGGCTGGACTTCTCAAAGGTTATATTGGGATCAGTGGTGCAGCATTC 554
Query 498 ACTGTCTTGTTCAGCATGGTGCTTCATCATTCAGCTACGAATCTGCTTCTGTTTCTTACT 557
|||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 555 ACTGTCTTGTTCAGCATGGTGCTTCACCATTCAGCTATGGATCTGCTTCTGTTTCTTACG 614
Query 558 GTTGGTATTCCGGTGATATGCTTAACTGTCATGTATTTCATCCGCCCCTGTATCCCGGCT 617
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 615 GTTGGTATTCCGGTTATATGCTTAACTGTGATGTATTTCATCCGCCCCTGTATTCCGGCT 674
Query 618 ACTGGTGAAGACCCTTCTGAGCCCATGTATTTCGCTTTCCTGCTTGCCACAAGTATACTT 677
|||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 675 ACTGGTGAAGACCCTTCTGAGCCCATGTATTTCGCTTTTCTGCTTGTCACTAGTATACTG 734
Query 678 TTTGCTGCTTATCTTGTTGTGACGACTGTTGTGAGTGAGGTGTTTATTCTGCCAAGCATA 737
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 735 TTTGCTGCTTATCTTGTTGTGACGACTGTTTTGAGTGAGGTGTTTATACTGCCCAGCATA 794
Query 738 CTCAAATATGTTCTTGTGGCTATCATGGTGTTACTTTTGCTGTCGCCTCTTGCGGTTCCC 797
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 795 CTCAAATATGTTCTTGTGGCTATCATGGTGTTACTTTTGTTGTCGCCTCTTGCGGTTCCC 854
Query 798 ATCAAGATGACACTTTTCCGTTCAAATGCCAAGAGCTCTCCACTGGGTTCTTCAGACAAT 857
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 855 ATCAAGATGACACTTTTCCGTTCAAATGCCAAGAGCTCTCCACTGGGGTCTTCAGACAAT 914
Query 858 CTAGCCAAAGAGGAAGGTACCCATGAAGCACCGTTGCTTACACCTTCTACCTCAGCTTCA 917
|||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 915 CTAGCCAAAGAGGAAGGTACTCATGAAGAACCGTTGCTGACACCTTCTACCTCAGCTTCA 974
Query 918 AACCTTGGGCCTATCTTCGAGGGAGATGATGAGTCGGATATGGAAATACTTCTCGCTGAA 977
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 975 AACCTTGGGCCTATCTTTGAGGGAGATGATGAGTCGGATATGGAAATACTTCTTGCTGAA 1034
Query 978 GGAGAAGGTGCGGTGAAGAAGAAGAGAAAACCCAGGAGAGGTGAGGATTTCAAGCTTGGC 1037
| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1035 GCAGAAGGTGCCGTGAAGAAGAAGAGAAAACCCAGGAGAGGTGAGGATTTCAAGTTTGGC 1094
Query 1038 CAAGTTTTTGTCAAGGCAGATTTCTGGCTCCTATGGTTTGTCTACTTCCTCGGCATGGGT 1097
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1095 CAAGTTTTTGTCAAGGCAGATTTCTGGCTCCTTTGGTTTGTCTACTTCCTCGGCATGGGT 1154
Query 1098 TCAGGTGTTACAGTCTCCAACAATTTGGCACAGATCGGATTTGCTTTTGGTATTAAGGAC 1157
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1155 TCAGGTGTTACAGTCTCGAACAACTTGGCACAGATCGGATTTGCTTTTGGTATTAAGGAC 1214
Query 1158 ACAACAATACTCCTCTGTCTCTTCAGTTTCTTCAACTTCATAGGCCGTCTTGCTTCAGGT 1217
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1215 ACAACAATACTCCTGTGTCTTTTCAGTTTCTTCAACTTCATAGGCCGTCTTGCTTCAGGT 1274
Query 1218 GCCATTTCGGAGCACTTTGTGAGGTCAAGAACGCTTCCAAGAACAATATGGATGGGAGCC 1277
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1275 GCCATTTCTGAGCACTTTGTGAGGTCAAGAACGCTTCCAAGAACACTATGGATGGGAGCC 1334
Query 1278 GCACAGCTAGTTATGGTGTTCACATTCCTCCTCTTCGCCATGGCTATCGACCACACCACG 1337
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 GCGCAGCTAGTTATGGTGTTCACATTCCTCCTCTTCGCCATGGCTATCGACCACACCA-- 1392
Query 1338 TCCATATACGTTGCAACTGCTCTAATTGGGATAGGCATGGGGTTTCAGTTCTTATCTATC 1397
| | |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 1393 T---T-TACGTTGCGACTGCTCTAATCGGAATATGCATGGGGTTTCAGTTCTTATCTATC 1448
Query 1398 GCAACCATCTCCGAGCTATTTGGTCTCAGACATTTTGGAATCAACTTCAACTTCATACTC 1457
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1449 GCAACCATCTCCGAGCTATTTGGTCTTAGACATTTTGGAATCAACTTCAACTTCATACTG 1508
Query 1458 CTGGGAAACCCGCTCGGTGCCACCATTTTCTCGGCCTTTCTCGCCGGATACATCTACGAC 1517
|||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 1509 CTGGGAAACCCGCTTGGTGCCACCATTTTCTCGGCCATTCTCGCAGGATACATCTATGAC 1568
Query 1518 AAGGAGGCTGATAAGCAAGGGAATATGACCTGCATTGGTCCTGACTGCTTTCGAGTAACT 1577
||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||
Sbjct 1569 AAGGAGGCTGATAAGCAAGGGAAGATGACCTGCATTGGTCCAGATTGCTTCCGAGTAACA 1628
Query 1578 TTCTTGGTTCTAGCCGGTGTTTGTGGGCTTGGAACTCTACTGAGCGTTATTTTGACAGTG 1637
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 1629 TTCTTGGTTCTAGCCGGTGTTTGTGGGCTTGGAACCCTGCTGAGCATTATTTTGACAGTG 1688
Query 1638 AGAATTCGCCCGGTTTATCAAGCCCTCTATGCGTCTGGCTCATTCCGGTTGCAGCCGCAA 1697
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1689 AGAATTCGCCCGGTTTATCAAGCTCTATATGCGTCTGGCTCATTCCGGTTGCAGCCGCAA 1748
Query 1698 TCAGCGGGTCAGTGATATATCCAGAGAG 1725
||| ||||||| ||||||||||||||||
Sbjct 1749 TCAACGGGTCATTGATATATCCAGAGAG 1776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85642129770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5