BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927453

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80520.1 | Symbols:  | Sterile alpha motif (SAM) domain-cont...   627    5e-179


> AT1G80520.1 | Symbols:  | Sterile alpha motif (SAM) domain-containing 
protein | chr1:30276481-30277059 FORWARD LENGTH=579
Length=579

 Score =  627 bits (339),  Expect = 5e-179
 Identities = 424/463 (92%), Gaps = 14/463 (3%)
 Strand=Plus/Plus

Query  22   ATGGATTGGTTCTCATGGCTCTCGAGGACGAATCTCGAAGCTTCTCTAATCTACGAGTAC  81
            |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct  1    ATGGATTGGTTCTCATGGCTCTCGAGAACAAATCTCGAAGCTTCTCTCATCTACGAGTAC  60

Query  82   GGTCTCTCTTTCTCGAACAACGAGCTCGAGTTCGAAGACATTGCTTACTTCAACCACGAA  141
            |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  61   GGTCTCTCTTTCTCAAACAACGAGCTCGAGTACGAAGACATTGCTTACTTCAACCACGAA  120

Query  142  TTTCTCCAGAGCATGGGGATCTCGATCGCTAAGCACCGCCTCGAGATCCTGAAGCTTGCT  201
            ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  TTTCTCCAGAGCATGGGTATCTCAATCGCTAAGCACCGCCTCGAGATCCTGAAGCTTGCT  180

Query  202  CGGCGTGACCGGAAACCGTCTCCGCTCACCGCTCGTTCAATTTTCAGAGTCTTGATTGCG  261
            |||||||| |||||||| || ||||||||||||||||| ||||||||||||||||| || 
Sbjct  181  CGGCGTGATCGGAAACCTTCACCGCTCACCGCTCGTTCGATTTTCAGAGTCTTGATCGCC  240

Query  262  ATCAAGAAGACCGGGAAATGCTTCTCCGAGTATGTTCGATCCTGGATCCGACGAGAGGAA  321
            |||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||
Sbjct  241  ATCAAGAAGACCGGGAAATGCTTCTCCGAGCATGTTAGGGCCTGGATCCGACGAGAGGAA  300

Query  322  TCGTCTCGGGCTCTGGT-GCTTGTGTCGAG--G-A-G-----CAGCGGGAACGGGAGATG  371
            ||||| ||||||||||| | ||||||||||  | | |     ||||||||||||||||||
Sbjct  301  TCGTCCCGGGCTCTGGTCG-TTGTGTCGAGAAGCACGAGTAGCAGCGGGAACGGGAGATG  359

Query  372  GAAAGGCGCGAGGAAGAAGAGATCGGTGATGCCGATGAGCAACGGAAATGGCGGAAAGGA  431
            |||| | |||||||||||||||| ||||||||||| |   |||||||||||||  |||||
Sbjct  360  GAAAAGTGCGAGGAAGAAGAGATTGGTGATGCCGA-GT--AACGGAAATGGCGTCAAGGA  416

Query  432  AGAGAGACTTCTGTTGACGAATGGAACTCCTTGTAGGCTCGAT  474
            ||||||||| |||||||||||||||||||||||||||||||||
Sbjct  417  AGAGAGACTCCTGTTGACGAATGGAACTCCTTGTAGGCTCGAT  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28080888173


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5