BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927464
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80420.1 | Symbols: ATXRCC1 | BRCT domain-containing DNA rep... 1487 0.0
> AT1G80420.1 | Symbols: ATXRCC1 | BRCT domain-containing DNA repair
protein | chr1:30235220-30237716 REVERSE LENGTH=1510
Length=1510
Score = 1487 bits (805), Expect = 0.0
Identities = 1022/1120 (91%), Gaps = 41/1120 (4%)
Strand=Plus/Plus
Query 13 TGTAAAGGACAAGATGTCCCATAAGCGAAATCTTCCTTCTTGGATGAGTTCAAGGGATCC 72
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 212 TGTAAAGGACAAGATGTCTCAGAAGCGAAATCTTCCTTCTTGGATGAGTTCTAGGGATCC 271
Query 73 TC-AAACTAGTCCGGGTAAGTCTCATTGTAAGAAGCCTAAGGAT------------GAAG 119
| | | || |||| ||||||||||||||||||||||||||||| ||||
Sbjct 272 -CGAGATTACTCCGAGTAAGTCTCATTGTAAGAAGCCTAAGGATGAAGGACCAACCGAAG 330
Query 120 AGCACAACAGCAGAAATGCCCCTTCCAACAAGTCAGAACACGCTGAGCCAAGTTCAAGTA 179
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 331 AGCACAACAGTAGAAATGCCCCTTCCAACAAGTCAGAACACGCCGAGCCAAGTTCAAATA 390
Query 180 CCACGGAATTCTCTAAACTTATGGAAGGAGTTGTTTTTGTGCTGTCGGGTTTTGTTAATC 239
|||| ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct 391 CCACTGAATTCTCTAAACTTATGGAAGGCGTTGTTTTTGTACTTTCGGGCTTTGTTAATC 450
Query 240 CTGAGAGGAGTACACTGAGGTCACAGGCCTTGACAATGGGAGCCACCTATCAACCTGACT 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 451 CTGAGAGGAGTACACTGAGGTCACAAGCCTTGACAATGGGAGCCACCTATCAACCTGACT 510
Query 300 GGAACTCTGACTCTACCTTGTTGATCTGTGCTTTTCCCAACACTCCAAAGTTCCGTCAAG 359
||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 511 GGAACGCTGGCTCTACCTTGTTGATTTGTGCTTTTCCTAACACTCCAAAGTTCCGTCAAG 570
Query 360 TTGAAACAAATGGGGGAACAA-TAGTCTCAAAGGATTGGATAACTGAGTGTTATACGCAG 418
||||||||||||| ||||||| || |||||||||| |||||||||||||||||| |||||
Sbjct 571 TTGAAACAAATGGTGGAACAATTA-TCTCAAAGGAGTGGATAACTGAGTGTTATGCGCAG 629
Query 419 AAGAAGTTGGTGGATATTGAGCAATACCTTATGCATGCTGGAAAACCATGGAGGAAAAGC 478
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AAGAAGTTGGTAGATATCGAGCAATACCTTATGCATGCTGGAAAACCATGGAGGAAAAGC 689
Query 479 AAT-GTTCGTCAAAATGCTATTCAAGAAAATAGCCAACACCTGTCTAAAAAACCAGAGAA 537
| | | || ||| |||||| || |||||| || |||||||||||||||||||||||||
Sbjct 690 AGTAG-TCCCCAAGATGCTAATCGAGAAAAGAGAGAACACCTGTCTAAAAAACCAGAGAA 748
Query 538 GCAAGTAGAGaaaaaaaCAGAAACAAGGGGAACTCCATCTACCTCATCCAAGAATAGATC 597
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 749 GCAAGTAGAGAAAAAAACAGAAACAAGGGGAACACCATCTACCTCATCCAAGAATAGATC 808
Query 598 AGCTTGCAATCTTGTGAAAGAGCCATTTTCTGTTACAGAGGTGAAGAAATGGGCCAGGGA 657
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 809 AGCTTGCAATCTTGTGAAAGAGCCATTTTTTGTTACAGAGGTGAAGAAATGGGCCAGGGA 868
Query 658 TGACCTAACTCAAACCATCTCATGGCTTGAGAGTCAGGAGGAGAAGCCAGAACCAGGCGA 717
|||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 869 TGACCTAAGTCAAACCATCTCATGGCTTGAGAGTCAGGAGGAAAAACCAGAACCAGGCGA 928
Query 718 AATCAAGCGAATAGCTGCTGAAGGAGTCTTAACCTGCTTACAAGACGCCATAGAGTCTCT 777
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 929 AATCAAGCGAATAGCTGCGGAAGGAGTCTTAACCTGCTTACAAGACGCCATAGATTCTCT 988
Query 778 TGAACAGAAGCAGGACATTGGATCAGTTACAGAGCTATGGAGCTTTGTCCCTCGTGTAGT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 TGAACAGAAGCAGGACATTGGATCAGTTACAGAGCTATGGAGCTTTGTCCCTCGTGTAGT 1048
Query 838 GAAGGAGCTTGGAAAGATCGAATCGTCTTCTAAAAAAGAGAATTCAACAGCTTCAAAGGA 897
|||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1049 GAAGGAGCTTGGAAAGATGGAATCGTCTTCTAAAAAGGAAAATTCAACAGCATCAAAGGA 1108
Query 898 AGAACTTTGCAAACAAGCCAAGTCTTGGAAAAAGATCTATGAGGTTGAGCTAGCAAACAC 957
|||| ||||||||||||| ||||| |||||||||||||| || | |||||||||||| ||
Sbjct 1109 AGAAGTTTGCAAACAAGCAAAGTCGTGGAAAAAGATCTACGAAGCTGAGCTAGCAAA-AC 1167
Query 958 GAGTGAAGCTGAATCATCGAGAACAAAAAGCAGAGAGACCTCTCGGGTTGCCTGTGGCTA 1017
| | || ||| || || | | | | ||||||||||||| ||||||||
Sbjct 1168 C-G-G--GC-GAAG-AT-GA-ATC-----G-A------CCTCTCGGGTTGCTTGTGGCTA 1207
Query 1018 TGACAGTGATGA-GACCGTTGAGATGACTGAAGAAGAGATCGAACTTGCTTATAGGAATG 1076
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1208 TGACAGTGAT-ATGACCGTTGAGATGACTGAAGAAGAGATCGAACTTGCTTATAGGAACG 1266
Query 1077 TTTCTTTAGAGTGTCTTTAGATGAAACTTGTTTCATTTTG 1116
|||||||||||||||||||||| |||||||||||||||||
Sbjct 1267 TTTCTTTAGAGTGTCTTTAGATCAAACTTGTTTCATTTTG 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5