BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927471
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80360.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 1916 0.0
> AT1G80360.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr1:30208499-30210803 REVERSE
LENGTH=1492
Length=1492
Score = 1916 bits (1037), Expect = 0.0
Identities = 1148/1203 (95%), Gaps = 2/1203 (0%)
Strand=Plus/Plus
Query 18 GAAATGGGTTCGTTCGGGATGCTTTCGAGGAGAACCTTGGGCACCGATATGCCCGTCATG 77
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 68 GAAATGGGTTCGTTTGGGATGCTTTCGAGGAGAACGTTGGGCACTGATATGCCCGTCATG 127
Query 78 GCTCAGATTCGGAGTTTAATGGCGGAATTGACGAACCCCATGTCTCTCGCCCAGGGAGTG 137
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GCTCAGATTCGGAGTTTGATGGCGGAATTGACGAACCCCATGTCTCTCGCCCAGGGAGTG 187
Query 138 GTGCATTGGCAGCCTCCCCAAAAGGCCTTAGACAAGGTCAAGGACCTTGTTTGGGATCCT 197
||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 188 GTGCATTGGCAGCCTCCTCAAAAGGCCTTAGAGAAGGTCAAGGAGCTTGTCTGGGATCCT 247
Query 198 ATGGTTAGTAATTATGGCCCCGATGAAGGTCTTCCCGAGTTAAGACATGCTCTTCTCAAT 257
|| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 248 ATCATTAGTTCTTATGGCCCCGATGAAGGTCTTCCCGAGTTGAGACAGGCTCTTCTCAAA 307
Query 258 AAGCTGCGTGTAGAAAACAAGCTTACCCAA-TCACAAGTGATGGTTACTGCAGGTGCCAA 316
|||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 308 AAGCTGCGTGAAGAAAACAAGC-TAACCAATTCACAAGTGATGGTTACTGCAGGTGCCAA 366
Query 317 TCAGGCGTTTGTTAACCTTGTTATCACATTATGTGATGCTGGTGATTCTGTTGTCATGTT 376
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 367 TCAGGCGTTTGTGAACCTTGTTATTACATTATGTGATGCTGGTGATTCGGTTGTCATGTT 426
Query 377 TGAGCCATACTACTTCAATTCCTACATGGCCTTTCAGATGACAGGAGTCACCAACATAAT 436
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TGAGCCATACTACTTCAACTCCTACATGGCCTTTCAGATGACAGGAGTCACCAACATAAT 486
Query 437 TGTTGGCCCTGGCCAGTCAGACACTCTCTATCCTGACGCAGACTGGTTAGAGAGGACACT 496
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 487 TGTTGGTCCTGGCCAGTCAGACACTCTCTATCCTGACGCTGACTGGTTAGAGAGGACACT 546
Query 497 CTCTGAGTCTAAACCAACCCCAAAAGTTGTAACTGTTGTGAATCCTGGTAACCCAAGCGG 556
|||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||
Sbjct 547 GTCTGAGTCTAAACCGACTCCGAAAGTTGTAACTGTTGTGAATCCTGGTAACCCAAGTGG 606
Query 557 CACCTATGTCCCTGAACCGCTTCTTAAGAGGATTTCACAAATATGCAAAGATGCAGGGTG 616
||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 607 CACCTATGTCCCTGAACCGCTGCTTAAGAGGATTGCTCAAATATGCAAAGATGCAGGGTG 666
Query 617 TTGGCTGATTGTAGATAACACATACGAGTATTTCATGTATGACGGTTCAAAACATTCTTG 676
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 667 CTGGCTGATTGTAGATAACACATACGAGTATTTCATGTATGACGGTTTAAAACATTGTTG 726
Query 677 CGTTGAGGGAGACCACATTGTTAATGTCTTCTCTTTCTCTAAAACCTACGGCATGATGGG 736
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 727 CGTTGAGGGAGACCACATTGTTAATGTCTTCTCTTTCTCTAAAACCTATGGCATGATGGG 786
Query 737 TTGGAGGCTTGGATATATAGCTTACTCAGACAGATTAGATGGGTTTGCAACAGAGCTTGT 796
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 787 TTGGAGGCTTGGATATATAGCTTACTCAGAGAGATTAGATGGGTTTGCAACAGAGCTTGT 846
Query 797 GAAAATTCAAGACAACATACCAATCTGTGCCGCCATAATCTCGCAGCGACTGGGTCTATA 856
||||||||| |||||||| ||||||||||| |||||||||||||||||||||| | ||||
Sbjct 847 GAAAATTCAGGACAACATCCCAATCTGTGCTGCCATAATCTCGCAGCGACTGGCTGTATA 906
Query 857 CGCATTAGAGGAAGGTTCTGGGTGGATAACGGAACGGGTAAAGAGCCTAGTGAAGAACCG 916
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 907 CGCATTAGAGGAAGGTTCTGGGTGGATAACGGAACGGGTAAAGAGTCTAGTGAAGAACAG 966
Query 917 GGATATTTTGAAAGAGGCGCTTGAGCCGCTGGGGAAGGAGAACGTTAAGGGAGGAGAAGG 976
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GGATATTGTGAAAGAGGCGCTTGAGCCGCTGGGGAAGGAGAACGTTAAGGGAGGAGAAGG 1026
Query 977 AGCGATTTACCTGTGGGCGAAACTACCAGAGGGACACAGAGATGATTTCAAGGTGGTGCG 1036
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1027 AGCGATATACCTGTGGGCAAAACTGCCAGAGGGACACAGAGATGATTTCAAGGTGGTGCG 1086
Query 1037 GTGGCTGGCTCACCGCCATGGTGTGGTGGTGATCCCGGGGTGTGCAAGTGGTGGCCCCGG 1096
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1087 GTGGCTGGCTCACCGCCATGGTGTGGTGGTGATCCCGGGGTGTGCAAGTGGTAGCCCCGG 1146
Query 1097 GTATCTCCGGGTTTCCTTTGGAGGGTTGCAAGAGGTTGAAATGAGAGCTGCAGCGGAGAG 1156
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1147 GTATCTCCGGGTTTCCTTTGGAGGGTTGCAGGAGGTTGAAATGAGAGCTGCAGCGGCGAG 1206
Query 1157 GCTGAGGAAAGGATTAGAGGAGCTGCTTCACCATGGAATGGTGGAGTGAGATGTTGTTAA 1216
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1207 GCTGAGGAAAGGAATAGAGGAGCTGCTTCACCATGGAATGGTGGAGTGAGACGTTGTTTA 1266
Query 1217 AAG 1219
|||
Sbjct 1267 AAG 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5