BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927472
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80350.1 | Symbols: ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FR... 2686 0.0
> AT1G80350.1 | Symbols: ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1,
FRC2, BOT1, FTR | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:30205315-30208226 REVERSE
LENGTH=1932
Length=1932
Score = 2686 bits (1454), Expect = 0.0
Identities = 1559/1610 (97%), Gaps = 5/1610 (0%)
Strand=Plus/Plus
Query 6 TTTTGAGTAAAAGAGGAAATGGTGGGTAGTAGTAATTCGTTGGCGGGTCTACAAGATCAC 65
|||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 159 TTTTTAGTAAAAGAGGAAATGGTGGGAAGTAGTAATTCGTTAGCGGGTCTACAAGACCAC 218
Query 66 TTGAAATTAGCGAGAGAATACGCACTAGAAGGATCCTACGACACATCTGTCATCTTCTTC 125
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 219 TTGAAATTAGCGAGAGAATATGCACTAGAAGGATCCTATGACACATCTGTCATCTTCTTC 278
Query 126 GATGGCGCCATTGCTCAGATCAACAAGCATTTAAACACCCTTGACGATCCTTTGGCCCGG 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GATGGCGCCATTGCTCAGATCAACAAGCATTTAAACACCCTTGACGATCCTTTGGCCCGG 338
Query 186 ACTAAATGGATGAACGTTAAAAAAGCCATAATGGAAGAGACGGAAGTTGTTAAGCAATTG 245
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 339 ACCAAATGGATGAACGTTAAAAAGGCCATAATGGAAGAGACGGAAGTTGTGAAGCAATTG 398
Query 246 GATGCAGAGAGGAGAGCATTTAAAGAAGCTCCCACTGGGCGTCGCGCTGCTTCTCCGCCT 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 399 GATGCAGAGAGGAGAGCATTTAAAGAAGCTCCCACTGGGCGTCGCGCTGCTTCTCCACCT 458
Query 306 ATCAATACCAAATCATCCTTTGTTTTTCAGCCCTTGGATGAGTATCCAACTTCATCC--- 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 ATCAATACCAAATCATCCTTTGTTTTTCAGCCCTTGGATGAGTATCCAACTTCATCCGGT 518
Query 363 GCTGCTCCTATGGATGATCCTGATGTGTGGAGGCCTCCTACCCGTGATGTTTCTAGTAGA 422
| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 519 GGTGGTCCTATGGATGATCCTGATGTGTGGAGGCCTCCTACCCGTGATGTTACTAGTCGA 578
Query 423 AGACCCGCCAGGCCTGGTCAAACTGGTACCAGAAAATCACCTCAAGATGGGGCTTGGGCT 482
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 579 AGACCCGCCAGGGCTGGTCAAACTGGTACTAGAAAATCACCTCAAGATGGGGCTTGGGCT 638
Query 483 CGTGGCCCTACAACACGAACAGGTCCAGCTTCCCGTGGTGGAAGAGGTGGGGCTACTAGT 542
||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 639 CGTGGCCCTACTACACGGACCGGTCCAGCTTCCCGTGGTGGCAGAGGTGGGGCTACTAGT 698
Query 543 AAGTCAACTGCAGGTACCCGCTCTTCCACTGCCGGTAAGAAGGGAGCTGCCTCAAAATCT 602
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 699 AAGTCAACTGCAGGTGCCCGCTCTTCCACTGCCGGAAAGAAGGGAGCTGCCTCAAAATCT 758
Query 603 ACCAAGGCAGAGTCTATGAATGGTGATGCTGAAGACGGGAAGTCAAAACGGGGATTGTAT 662
| |||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 759 AACAAGGCTGAGTCTATGAATGGTGATGCTGAAGATGGGAAGTCAAAAAGGGGATTGTAT 818
Query 663 GAGGGACCTGATGAGGACCTGGCCGCTATGCTTGAAAGGGATGTGTTGGACTCAACTCCT 722
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 819 GAGGGACCTGATGAGGACCTGGCTGCTATGCTTGAAAGGGATGTGTTGGACTCAACTCCT 878
Query 723 GGTGTCCGTTGGGATGATGTTGCAGGTTTGTCTGAAGCCAAAAGGCTGCTTGAGGAGGCA 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GGTGTCCGTTGGGATGATGTTGCAGGTTTGTCTGAAGCCAAAAGGCTGCTTGAGGAGGCA 938
Query 783 GTTGTCCTTCCTTTATGGATGCCCGAATACTTTCAGGGTATTCGAAGACCATGGAAAGGA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GTTGTCCTTCCTTTATGGATGCCCGAATACTTTCAGGGTATTCGAAGACCATGGAAAGGA 998
Query 843 GTTCTCATGTTTGGTCCTCCTGGGACAGGTAAAACCCTGTTGGCAAAAGCAGTTGCAACC 902
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 999 GTTCTCATGTTTGGTCCTCCTGGGACAGGTAAAACCCTGTTGGCAAAAGCTGTTGCAACT 1058
Query 903 GAGTGTGGTACCACCTTCTTCAACGTCTCTTCTGCTACATTAGCTTCAAAATGGCGTGGA 962
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1059 GAGTGTGGTACCACCTTCTTCAATGTATCTTCTGCTACATTAGCTTCAAAATGGCGTGGA 1118
Query 963 GAGAGTGAGCGCATGGTCAGATGCCTGTTTGATCTGGCTAGGGCATATGCTCCAAGTACA 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1119 GAGAGTGAGCGCATGGTCAGATGCCTGTTTGATCTGGCTAGGGCATATGCTCCAAGCACA 1178
Query 1023 ATTTTTATTGATGAGATCGACTCTCTCTGCAATTCTCgggggggTTCTGGAGAGCATGAA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 ATTTTTATTGATGAGATCGACTCTCTCTGCAATTCTCGGGGGGGTTCTGGAGAGCATGAA 1238
Query 1083 TCGTCAAGAAGGGTGAAATCGGAACTCCTAGTTCAAGTAGATGGAGTGAGCAATACAGCG 1142
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TCATCAAGAAGGGTGAAATCGGAACTCCTAGTTCAAGTAGATGGAGTGAGCAATACAGCG 1298
Query 1143 ACAAATGAAGACGGTAGTCGCAAAATAGTGATGGTACTGGCAGCTACCAACTTCCCATGG 1202
||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct 1299 ACAAATGAAGATGGTAGTCGCAAAATAGTAATGGTATTGGCAGCTACCAACTTCCCGTGG 1358
Query 1203 GACATAGATGAAGCTCTCAGGAGGAGGCTGGAAAAACGTATATATATCCCACTTCCAGAT 1262
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1359 GACATAGATGAAGCTCTCAGGAGGAGGTTGGAAAAACGTATATATATCCCACTTCCAGAT 1418
Query 1263 TTTGAAAGTCGTAAGGCACTTATCAATATCAATCTGAGAACAGTCGAGGTGGCGAGTGAT 1322
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1419 TTTGAAAGTCGTAAGGCTCTTATCAATATCAATCTGAGAACAGTTGAGGTGGCGAGTGAT 1478
Query 1323 GTTAATATTGAAGATGTGGCCCGGAGAACGGAAGGGTACAGTGGAGACGATCTGACTAAC 1382
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 GTTAACATTGAAGATGTGGCCCGGAGAACGGAAGGGTACAGTGGAGACGATCTGACTAAC 1538
Query 1383 GTGTGCAGGGACGCATCAATGAACGGGATGAGGCGTAAGATAGCGGGGAAAACGAGGGAT 1442
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1539 GTGTGCAGGGACGCATCAATGAACGGGATGCGGCGTAAGATAGCGGGGAAAACGAGAGAT 1598
Query 1443 GAGATAAAGAACATGTCGAAAGACGATATATCAAATGATCCTGTGGCTATGTGTGATTTC 1502
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1599 GAGATAAAGAACATGTCGAAAGACGATATATCAAATGATCCAGTGGCAATGTGTGATTTC 1658
Query 1503 GAAGAGGCCATTAGGAAAGTGCAACCGAGTGTGTCTTCCTCTGATATTGAGAAACACGAG 1562
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1659 GAAGAGGCCATTAGGAAAGTGCAACCGAGTGTGTCTTCCTCTGATATCGAGAAACACGAG 1718
Query 1563 AAGTGGCTCTCTGAGTTTGGATCTGCTTAATTTAAACCCACTTTTTCTTA 1612
|||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1719 AAGTGGCTCTCTGAGTTTGGATCTGCTTAATT-AAACCCACTTTTT-TTA 1766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79618064370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5