BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927476
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80310.1 | Symbols: | sulfate transmembrane transporters | ... 2121 0.0
> AT1G80310.1 | Symbols: | sulfate transmembrane transporters
| chr1:30194618-30196554 FORWARD LENGTH=1937
Length=1937
Score = 2121 bits (1148), Expect = 0.0
Identities = 1306/1383 (94%), Gaps = 8/1383 (1%)
Strand=Plus/Plus
Query 6 ACTGTAGATCCAATCATGGAGACAACTACCACTCCTCTGCTCCCCGGTGATCGTGGCCGA 65
||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 319 ACTTTAGATCCAATCATGGAGACAACTACAACTCCTCTGCTCCCCGGTGATCGCAGCAGA 378
Query 66 TGCGGGTGGCTCCGCCGTCGTCTCCGCCTCAAAAACCCTCTCTCTTCTGAACTCTCCGGC 125
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 379 TGCGGGTGGCTCCGTCGCCGTCTCCGCCTCAAAAACCCTCTTTCTTCTGAACTCTCCGGC 438
Query 126 GCTGTCGGTGATCTCGGCACCTTCATCCCCATCGTCCTTACACTAACTCTAGTCTCCAAT 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GCTGTCGGTGATCTCGGCACCTTCATCCCCATCGTCCTTACACTAACTCTAGTCTCCAAT 498
Query 186 CTCGATCTCTCCACCACTCTCATCTTCACAGGTTTCTACAACATCGCCACCGGTCTCCTC 245
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 499 CTTGATCTCTCCACCACTCTCATCTTCACTGGTTTCTACAACATCGCCACCGGTCTCCTC 558
Query 246 TTCGACATCCCTATGCCCGTCCAGCCCATGAAATCCATCGCCGCCGTCGCTGTCTCCGAA 305
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 559 TTTGACATCCCTATGCCCGTCCAGCCCATGAAATCCATCGCCGCTGTCGCTGTCTCCGAA 618
Query 306 TCCCCACATCTAACTCCTTCTCAGATTGCCGCCGCTGGAGCATCCACTGCCGCAACGCTC 365
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 619 TCCCCGCATCTAACTCCTTCTCAGATTGCCGCCGCTGGTGCATCCACTGCCGCCACGCTC 678
Query 366 CTCCTCCTTGGCGCCACCGGAGCCATGTCTTTCCTCTACAACCTCATCCCTCTCCCAGTC 425
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 679 CTCCTCCTTGGCGCCACCGGAGCTATGTCTTTCCTCTACAACATCATCCCTCTCCCAGTT 738
Query 426 GTACGCGGCGTCCAGCTCTCTCAGGGTCTTCAGTTCGCCTTCACCGCCATCAAATACGTC 485
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 739 GTACGCGGCGTCCAGCTTTCTCAAGGTCTTCAGTTCGCCTTCACCGCCATCAAATACGTC 798
Query 486 AGGTTTAATTACGACGCTGCTACTCTCAAACCCTCTTCTTCTCCTCGTACATGGCTTGGC 545
|||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 799 AGGTTTAATTACGATACTGCCACTCTCAAACCCTCTTCTTCTCCTCGTATTTGGCTTGGC 858
Query 546 CTCGACGGCCTTATCTTGGCTCTAGCTGCTCTGCTCTTCATCATTTTGTCCACCGGCTCT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CTCGACGGCCTTATCTTGGCTCTAGCTGCTCTGCTCTTCATCATTTTGTCCACCGGCTCT 918
Query 606 GGCAACGACAGAGAC-CTCCAAGATGGAGATTTTGCCGAGACCTCAAGCAACGAAAGCCA 664
|||||||||||||| || ||||||||||| | |||||||| || ||||||||||||||
Sbjct 919 GGCAACGACAGAGAAGCTG-AAGATGGAGATCTCGCCGAGACTTCCAGCAACGAAAGCCA 977
Query 665 GTCTCGCCGGAGAAGACTGCGTCTTCTGTCTTCAATTCCATCAGCGCTAATCGTGTTCGC 724
|||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 978 GTCTCGCCGGAGGAGACTGCGTCTTCTGTCTTCGATTCCATCTGCGCTGATCGTGTTCGC 1037
Query 725 TA-TCGGGTTGGTTCTCTGTTTCATTCGCGATCCGTCCATTTTCAAAGACCTTAAATTCG 783
| ||||||| || ||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1038 -ACTCGGGTTAGTGCTCTGTTTCATACGTGATCCATCCATTTTCAAAGACCTTAAATTCG 1096
Query 784 GTCCGTCGAAATTCCACATTCTGAGAATCACTTGGGATGATTGGAAAATCGGGTTTGTAA 843
|||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 1097 GTCCCTCGAAGTTCCACATTCTGAGAATCAGTTGGGATGATTGGAAAATCGGGTTTCTGA 1156
Query 844 GGGCGGCTATTCCTCAGATTCCACTCTCTGTACTGAACTCAGTGATCGCAGTTTGCAAAC 903
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1157 GGGCGGCGATTCCTCAGATTCCACTCTCTGTACTGAACTCAGTGATCGCAGTTTGTAAAT 1216
Query 904 TATCCAACGACTTGTTCGACAAGGAACTCTCCGCGACTACAGTGTCCATCAGCGTTGGGG 963
||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1217 TATCCAATGACTTGTTTGACAAGGAACTCTCTGCGACTACAGTCTCCATCAGCGTTGGGG 1276
Query 964 TGATGAACTTAATCGGGTGCTGGTTTGGCGCTATGCCTGTCTGTCACGGTGCTGGCGGGT 1023
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1277 TGATGAACTTAATAGGGTGCTGGTTTGGCGCTATGCCCGTCTGTCACGGTGCTGGTGGGT 1336
Query 1024 TAGCTGGGCAGTA-CAGGTTCGGGGCAAGGAGTGGATTGTCGGTTATCTTTCTCGGGATC 1082
||||||| ||||| | |||| ||||||||||||||||| || ||||| |||||||| |||
Sbjct 1337 TAGCTGGTCAGTATC-GGTTTGGGGCAAGGAGTGGATTATCCGTTATTTTTCTCGGAATC 1395
Query 1083 GGGAAACTGATTGTGGGTCTGGTGTTTGGAAACTCGTTTGTAAGGATTCTGAGCCAGTTT 1142
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1396 GGGAAACTGATTGTGGGTCTGGTGTTTGGAAACTCCTTTGTAAGGATTCTGAGTCAGTTT 1455
Query 1143 CCGATTGGAATTTTGGGGGTTCTGTTGCTATTCGCGGGGATCGAACTGGCAATGGCTTCC 1202
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1456 CCGATTGGAATTTTAGGGGTTCTGTTGCTATTCGCGGGAATCGAACTGGCAATGGCTTCC 1515
Query 1203 AAAGACATGAACACCAAAGAAGATTCCTTCATCATGTTGGTCTGCGCCGCTGTGTCGATG 1262
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1516 AAAGACATGAACTCCAAAGAAGATTCCTTCATCATGCTGGTCTGCGCCGCTGTGTCGATG 1575
Query 1263 ACTGGCTCGAGTGCCGCCTTAGGATTTGGGTGTGGAGTTGTTCTTTACTTGTTACTGAAG 1322
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1576 ACTGGCTCGAGTGCCGCCTTAGGATTTGGTTGTGGAGTTGTTCTTTACTTGTTACTGAAG 1635
Query 1323 CTAAGAACGTTAGACTGTTCTTCTGTAACTCTGTTTTCCCGGTCAAGTGATG-GATCGCA 1381
||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||
Sbjct 1636 CTAAGAACGTTAGACTGTTCTTCAGTAACTCTGTTTTCCCGGTCAAGTGATGAG-TCGCA 1694
Query 1382 GGT 1384
|||
Sbjct 1695 GGT 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5