BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927493
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1999 0.0
> AT1G80150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:30148388-30150517 FORWARD LENGTH=2035
Length=2035
Score = 1999 bits (1082), Expect = 0.0
Identities = 1183/1232 (96%), Gaps = 5/1232 (0%)
Strand=Plus/Plus
Query 1 CTCGAGGGAGGCCCTGGATCATGCTATCTCTGCGACACATTCGCAGATTCTGCCATTTTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CTCGAGGGAGGCCCTGGATCATGCTATCTCTGCGACACATTCGCAGATTCTGCCATTTTC 390
Query 61 CTTCCTCTGCAGCCACTGGTATTGCATATGTTTCAACTGACTCCAATCAGATCCAGGCTT 120
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 391 CTTCCTCTGCAGCCACTGGTATTGCATATGTTTCAACAGAGTCCAATCAGATCCAGGGTT 450
Query 121 TGAAACCGCTTGAGGAGCCTGCCCTTGTCAAGCTTAAATCTGAGCGAGATCCC-GAGAAG 179
|||||||||| ||||| ||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 451 TGAAACCGCTCGAGGAACCTGCCCTTGTGAAGCTTAAATCTGAGCGAGA-CCCTGAGAAG 509
Query 180 CTATTCAAGCTCTTTAAAGCTAATGCCACTAACCGTTTGGTGATTGAGAATCGATTTGCT 239
|||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 510 CTATACAATCTCTTTAAAGCTAATGCCACTAACCGTTTGGTGATTGAAAATCGATTTGCT 569
Query 240 TTTGAAGACACGGTTTCTAGATTAGCTGGGGCAGGTCGGCTTGATTTCATTCAGGATCTG 299
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 570 TTTGAAGATACGGTCTCTAGATTAGCTGGGGCAGGTCGGCTTGATTTCATTGAGGATCTG 629
Query 300 CTTGAGCATCAGAAGACACTTCCACAAGGTAGGCGCGAAGGTTTCATTGTTAGGATCATA 359
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 630 CTTGAGCATCAGAAGACACTTCCACAAGGTAGGCGTGAGGGTTTCATTGTTAGGATTATA 689
Query 360 ATGTTGTATGGCAAGGCTGGGATGACGAAGCAAGCACTTGATACTTTCTACAATATGGAT 419
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 690 ATGTTGTATGGCAAGGCTGGAATGACGAAGCAAGCACTTGATACTTTCTTCAATATGGAT 749
Query 420 TTATACGGTTGCAAAAGAACTGTTAAGTCCTTCAATGCCGCTCTTCAAGTCTTATCTTTC 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TTATACGGTTGCAAAAGATCTGTTAAGTCCTTCAATGCCGCTCTTCAAGTCTTATCTTTC 809
Query 480 AAACCTGATCTCCACACCATCCGGGAGTTCCTTCATGACGCTCCAGCAAACTATCGCATT 539
|| |||||||||||||||||| ||||||||||||| ||||| ||| | || ||| |||||
Sbjct 810 AATCCTGATCTCCACACCATCTGGGAGTTCCTTCACGACGCCCCATCGAAGTATGGCATT 869
Query 540 GATATTGATGCAGTTTCTTTTAACATTGCCATTAAATCTTTCTGTGAGCTGGGTATTCTT 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GATATTGATGCGGTTTCTTTTAACATTGCCATTAAATCTTTCTGTGAGCTGGGTATTCTT 929
Query 600 GACGGGGCGTATATGGCAATGAGGGAGATGGAGAAATCTGGGTTAAAACCAGATGTAGTT 659
|||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 930 GACGGGGCCTATATGGCAATGAGGGAGATGGAGAAATCAGGGTTAACACCAGATGTAGTT 989
Query 660 ACATATACTACGCTTATATCGGCGTTTTACAAGCACGAGAGGTGTGTGATTGGAAATGGA 719
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 990 ACATATACTACACTTATATCGGCGTTATACAAGCACGAGAGGTGTGTGATTGGAAATGGA 1049
Query 720 TTGTGGAACCTTATGGTCCTCAAGGGCTGTAGGCCTAATCTCACCACTTTTAATGTTAGG 779
||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 1050 TTGTGGAACCTTATGGTCCTCAAGGGCTGTAAGCCGAACCTCACCACTTTTAATGTTAGG 1109
Query 780 ATTCAGTTTTTAGTCAATAGGAGACGAGCTTGGGATGCAAATGATCTGTTGCTGTTGATG 839
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 ATTCAGTTTTTAGTGAATAGGAGACGAGCTTGGGATGCAAATGATCTGTTGCTGTTGATG 1169
Query 840 CCAAAACTCCAGGTGGAACCGGACAGCATAACATATAACATGGTTATCAAAGGGTTTTTC 899
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 CCTAAACTCCAGGTGGAACCGGACAGCATAACATATAACATGGTTATCAAAGGGTTTTTC 1229
Query 900 CTTGCGAGGTTCCCTCACATGGCGGAAAGGGTTTATACAGCGATGCATGGTAAGGGGTAC 959
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1230 CTTGCGAGGTTCCCTGACATGGCGGAAAGAGTTTATACAGCGATGCATGGTAAGGGGTAC 1289
Query 960 AAACCCAATGTGAAGATATACCAGACGATGATTCACTATTTGTGCAAGGCAGGAAATTTT 1019
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 AAACCCAATTTGAAGATATACCAGACGATGATTCACTATTTGTGCAAGGCAGGAAATTTT 1349
Query 1020 GATTTGGCTTATACAATGTGCAAGGATTGTATGAGAAAGAAGTGGTACCCAAACTTGGAC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 GATTTGGCTTATACAATGTGCAAGGATTGTATGAGAAAGAAGTGGTACCCAAACTTGGAC 1409
Query 1080 ACAGTTGAGATGTTGCTCAAAGGGCTTGTGAAAAAGGGCCAGCTTGATCAGGCTAAGTCG 1139
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1410 ACAGTTGAGATGTTGCTCAAAGGGCTTGTGAAAAAGGGGCAGCTTGATCAGGCTAAGTCG 1469
Query 1140 ATCATGGGGTTAGTTCACA-AACGAGTACCTCCTTTCAGGTCAAAACAGTTGCTCTCCCT 1198
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1470 ATCATGGAGTTAGTTCACAGAA-GAGTACCTCCTTTCAGGTCAAAACAGTTGCTCTCCCT 1528
Query 1199 TAAGTCCATTTTGTAATGTTTACACGACAATG 1230
|||||||||||||||||||||||| || ||||
Sbjct 1529 TAAGTCCATTTTGTAATGTTTACATGA-AATG 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60642258360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5