BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927497
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80120.1 | Symbols: | Protein of unknown function (DUF567) ... 1118 0.0
> AT1G80120.1 | Symbols: | Protein of unknown function (DUF567)
| chr1:30139101-30140204 FORWARD LENGTH=948
Length=948
Score = 1118 bits (605), Expect = 0.0
Identities = 640/657 (97%), Gaps = 1/657 (0%)
Strand=Plus/Plus
Query 15 TCGATCATGAAGGGGGGTTTGCTTGTGGACGATGAATTTATTCACGAAGAAGAAAGGAGC 74
|||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 92 TCGAACATGAAGGGGGGTTTGCTTGTGGACGATGAATTTATACACGGAGAAGAAAGGAGC 151
Query 75 CTGACTGTTCGGAAAACTTCTCTGTTTTTCGCCGGCGATGGTTTCACGGTTTACGACTGC 134
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 152 CTGACTGTTCGGAAAACATCTCTGTTTTTCGCCGGCGATGGTTTCACAGTTTACGACTGC 211
Query 135 AAGGGAAGTTTGGTCTTTCGGGTGGACTCTTACGGTGGTCCCAACACCCGCGACACCGAC 194
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 212 AAGGGAAGTTTGGTGTTTCGGGTTGACTCTTACGGTGGTCCCAACACCCGCGACACCGAC 271
Query 195 GAGGTTGTCCTCATGGACGCTAACGGCCGTTGTCTCCTCACCCTCCGACGAAAGAGGCCG 254
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 272 GAGGTTGTCCTCATGGACGCTCACGGCCGTTGTCTCCTCACCCTCCGACGAAAGAGGCCG 331
Query 255 AGTTTGCGACGGAGATGGGAGGGGTATCTCGGGGAGAGATCGGACGGCCAGAAACCGATA 314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 AGTTTGCGACGGAGATGGGAGGGGTATCTCGGGGAGAGATCGGACGGCCAGAAACCGATC 391
Query 315 TTCGGGGTCAGGAGATCGTCGATAATCGGGAGGAACAGTGTGACGGTGGAGGTGTACGGG 374
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TTCGGGGTAAGGAGATCTTCGATAATCGGGAGGAACAGTGTGACGGTGGAGGTGTACGGG 451
Query 375 GACTACCAGTGCAGCGAGTACCTGATAGAAGGTAGTTTCGGGGCAAGGAGCTGCACGGTG 434
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 452 GACTACCAGTGCAGCGAGTACCTGATAGAAGGTAGTTTCGGGGCAAGGAACTGCACGGTG 511
Query 435 GTGGAGGCGGAGACGAGGCGGAAAGTGGCGGAGATAAGGCGCAAAGTGGATGCGTCAACG 494
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 512 GTGGAGGCGGAGACGAGGCGGAAGGTGGCGGAGATAAGGCGCAAAGTGGATGCGTCAACG 571
Query 495 AACGTGATGCTTGGGAAAGACGTTTTCTCGTTGAACGTGAAGCCCGGTTTCGATGGAGCC 554
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 572 AACGTGATGCTTGGGAAAGACGTTTTCTCGTTGAACGTGAAGCCCGGTTTTGATGGAGCC 631
Query 555 TTTGCCATGGGATTGGTTCTTGTGCTTGATCAAATCTACGGCGACGATCTCCTTGAGGTT 614
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TTTGCAATGGGATTGGTTCTTGTGCTTGATCAAATCTACGGCGACGATCTCCTTGAGGTT 691
Query 615 GGTGAGGAACAGGTGCACCCTTCCGCAGAAGATCTCTGATTTGATTTTTCTCC-TTT 670
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 692 GGTGAGGAACAGGTGCACCCTTCCGCAGAAGATCTCTGATTTGATTTTTCACCCTTT 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5