BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927499
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80110.1 | Symbols: ATPP2-B11, PP2-B11 | phloem protein 2-B1... 1136 0.0
> AT1G80110.1 | Symbols: ATPP2-B11, PP2-B11 | phloem protein 2-B11
| chr1:30135381-30136956 FORWARD LENGTH=1048
Length=1048
Score = 1136 bits (615), Expect = 0.0
Identities = 748/811 (92%), Gaps = 14/811 (2%)
Strand=Plus/Plus
Query 3 CAA-CAATCGGAGCACGCAATGAATAATCTCCCAGAAGACTGCATCGCCATGATCCTTTC 61
||| ||||||||| | ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 67 CAATCAATCGGAGGAAGCAATGAATAATCTCCCAGAAGATTGCATCGCCAAGATCCTTTC 126
Query 62 CTTGACTACGCCTCTCGACGTTTGCCGATCATCGGCGGTCTCCAGGATCTTCAGATCCGC 121
|||||| || ||||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 127 CTTGACAACTCCTCTCGACGTTTGCCGTTTATCGGCGGTCTCCAGTATCTTCAGATCCGC 186
Query 122 CGCCGACTCCGACGATGTCTGGAACCATTTCTTACCGACGACTGATTTCCCCGCCGGCTT 181
||||| |||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 187 CGCCGGCTCCGACGATGTCTGGAATCATTTCTTACCG--G-CTGATTTCCCCGCCGGCTT 243
Query 182 TGCGGCACCTGCTGGTCTCCCCACCAGGAAGCAACTCTTCTTCTCCCTCGTCGATAACCC 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TGCGGCACCTGCTGGTCTTCCCACCAGGAAGCAACTCTTCTTCTCCCTCGTCGATAACCC 303
Query 242 TCTTCTTCTCAACGACACTGATTTGAGCTTTTCGCTGGAGAGAAAGAGTGGCAACAAGTG 301
||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 304 TCTTCTTATCAACGGCACTCTTTTGAGCTTTTCGCTGGAGAGAAAGAGTGGCAACAAGTG 363
Query 302 CTACATGATGGCTGCGAGGGCCTTGAGTATTGTTTGGGGACATGATCCAAGATACTGGCA 361
|||||||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 364 CTACATGATGGCAGCGAGGGCCTTGAATATTGTTTGGGGACATGAGCAAAGATACTGGCA 423
Query 362 CTGGATCTCTCTTCCTAACACCAGGTTCGGAGAAGTGGCTGAGCTCATCATGGTCTGGTG 421
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CTGGATCTCTCTCCCTAACACCAGGTTCGGAGAAGTGGCTGAGCTCATCATGGTCTGGTG 483
Query 422 GCTTGAGATCACTGGCAAGATCAACATTACCCTTCTCTCTGATGACACCCTCTACGCCGC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GCTTGAGATCACTGGCAAGATCAACATTACCCTTCTCTCTGATGACACCCTCTACGCCGC 543
Query 482 TTACCTCGTCTTCAAATGGAACCCCAGTCCATACGGTTTTCGCCAGCCTGTAGAGGCCTC 541
|||| ||||||| || ||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 544 TTACTTCGTCTTTAAGTGGAACCATAGTCCTTACGGTTTTCGCCAGCCTGTAGAAACCTC 603
Query 542 TCTTGTCTTCTTGGCTGACACCGAGAGTACTGA---TGATGTTCAGCCTTCCATGATTAG 598
|||||||| ||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 604 CCTTGTCTT---GGCTGACACCGAGAGCACTGACAATGTTGTTCAGCCTTCCATGATTAG 660
Query 599 TCTCATGCAAGATCCAAGCGGTGATGAAGCTCAGTCCGCTGAGCTGAGAAGAGACGGTTG 658
||||||||||||| || |||| || |||| ||||||| ||| ||||||||||||||||||
Sbjct 661 TCTCATGCAAGATTCAGGCGGCGAAGAAGGTCAGTCCCCTGTGCTGAGAAGAGACGGTTG 720
Query 659 GTACGAGGTGGAATTGGGGCAATTCTTTAAAAGGAGAGGAGATATGGGTGAAATAGAGAT 718
||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 721 GTACGAGGTTGAATTGGGACAGTTCTTTAAAAGGAGAGGAGATTTGGGTGAAATAGAGAT 780
Query 719 GAGCCTCAAGGAGACAAAGAGG-CCTTTTGAGAAGAAAGGCCTTATTCTTTATGGCATCG 777
||||||||||||||||||| || |||| ||||||||| ||||||||| ||||||||||||
Sbjct 781 GAGCCTCAAGGAGACAAAG-GGTCCTTATGAGAAGAAGGGCCTTATTGTTTATGGCATCG 839
Query 778 AGATTAGGCC-GAAGCCCTGATTGTATCCTA 807
||||||| || | ||||| |||||||||||
Sbjct 840 AGATTAGACCAGT-GCCCTAATTGTATCCTA 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5