BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927503
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80080.1 | Symbols: TMM, AtRLP17 | Leucine-rich repeat (LRR)... 2211 0.0
> AT1G80080.1 | Symbols: TMM, AtRLP17 | Leucine-rich repeat (LRR)
family protein | chr1:30128005-30129591 REVERSE LENGTH=1587
Length=1587
Score = 2211 bits (1197), Expect = 0.0
Identities = 1385/1475 (94%), Gaps = 16/1475 (1%)
Strand=Plus/Plus
Query 1 AACAACAACTACTaaaaaaaaTGGCACAATATGAACTCTTCCGCCAAATATTCATTGTCT 60
||||||||| ||| || ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 11 AACAACAACAACT--AAGAAATGGCACGATATGAATTCTTCCGCCAAATATTCATTGTCT 68
Query 61 TGTCGATAATTTCTCCGTTAGTCAGATGTTTCACCGTGATCACCTCCGACTCGACGGCGC 120
|||| ||| |||||||||| ||||||| |||||| ||||||||||||||||||||||| |
Sbjct 69 TGTCTATAGTTTCTCCGTTGGTCAGATCTTTCACTGTGATCACCTCCGACTCGACGGCCC 128
Query 121 CATCTGCTCTGATCGACGGCCCCCAAACTGGATTCACGATGACCAACGACGGCGCTCGCA 180
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 129 CATCTGCTCTGATCGACGGCCCACAAACTGGATTCACGATGACCAATGACGGCGCTCGCA 188
Query 181 CGGAGCCTGACGAGCAAGACGCCGTCTACGACATTATGCGTGCGACCGGCAACGACTGGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CGGAGCCTGACGAGCAAGACGCCGTCTACGACATTATGCGTGCGACCGGCAACGACTGGG 248
Query 241 CTGCCGCGATTCCAGACGTTTGCCGAGGGAGATGGCACGGGATCGAGTGTATGCCGGACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CTGCCGCGATTCCAGACGTTTGCCGAGGGAGATGGCACGGGATCGAGTGTATGCCGGACC 308
Query 301 AGGATAACGTCTACCACGTGGTCTCTCTGTCGTTCGGAGCGCTCTCAGACGACACGGCGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 AGGATAACGTCTACCACGTGGTCTCTCTGTCGTTCGGAGCGCTCTCAGACGACACGGCGT 368
Query 361 TCCCCACTTGTGATCCACAACGCTCTTACGTCTCCGAGTCCCTCACGAGGCTCAAACACC 420
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 369 TTCCGACTTGTGATCCACAACGCTCTTACGTCTCTGAGTCCCTCACGAGGCTCAAACACC 428
Query 421 TCAAAGCCCTGTTCTTCTACCGCTGTTTAGGCCGCGCCCCACAGCGCATACCGGCGTTTC 480
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 429 TCAAAGCCTTGTTCTTCTACCGATGTTTAGGCCGCGCCCCACAGCGCATACCGGCGTTTC 488
Query 481 TGGGCCGTCTCGGTTCGAGTCTGCAAACGCTGGTTCTGAGGGAGAATGGCTTTTTCGGTC 540
|||| || ||||| ||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 489 TGGGACGCCTCGGCTCGAGTCTGCAAACGCTGGTTCTGAGGGAGAATGGTTTTTTGGGAC 548
Query 541 CTATCCCTGACGAATTGGGCAATCTTACCAATTTGAAAGTTCTTGATTTGCATAAAAATT 600
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 549 CTATCCCTGACGAATTGGGCAATCTCACCAATTTGAAAGTTCTTGATTTGCATAAAAATC 608
Query 601 ATCTCAACGGCTCCATTCCCTTGTCGTTTAACCGGTTCTCCGGTTTAAGATCGCTTGATT 660
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 609 ACCTCAACGGCTCCATTCCCTTGTCGTTCAACCGGTTCTCCGGTTTAAGATCGCTTGATT 668
Query 661 TGAGTGGGAACCGGTTGACTGGTTCCATTCCCGGTTTTCTTCTTCCGGAGCTGAACGTTC 720
||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 669 TGAGTGGTAACCGGTTGACTGGTTCCATTCCCGGTTTTGTTCTTCCGGCGCTGAGCGTTC 728
Query 721 TGGATTTGAACCAGAATCTTTTGACCGGACCGGTTCCATCCACACTCTCGACCTGTGGAT 780
|||||||||||||||||||||| ||||||||||||||| |||||||| | | ||||||||
Sbjct 729 TGGATTTGAACCAGAATCTTTTAACCGGACCGGTTCCACCCACACTCACAAGCTGTGGAT 788
Query 781 CGTTGATCAAAATCGATCTTAGCCGAAACAGAGTCACTGGTCCTATCCCAGACTCGATTA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 789 CGTTGATCAAAATCGATCTTAGCCGAAACAGAGTCACTGGTCCTATCCCAGAATCGATTA 848
Query 841 ACCGGCTCAACCAATTAGTGCTTCTGGATTTGAGCTATAACCGGTTATCAGGTCCATTCC 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 849 ACCGGCTCAACCAATTAGTGCTTTTGGATTTGAGCTATAACCGGTTATCAGGTCCATTCC 908
Query 901 CGCCTTCTCTCCAAGGTCTAAACTCTCTTCAAGCTTTGATGCTCAAAGGCAATACAAAAT 960
|| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 909 CGTCTTCTCTCCAAGGCCTAAACTCTCTTCAAGCTTTAATGCTCAAAGGCAACACAAAAT 968
Query 961 TCTCAACAACGATTCCTGAAAACGCGTTCAAAGGGCTCAAGAACTTGATGGTTCTTGTTC 1020
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 969 TCTCAACAACGATTCCTGAAAACGCGTTCAAAGGGCTCAAGAACTTGATGATTCTTGTTC 1028
Query 1021 TCTCAAATATGAATC-TCCAGGGTTCGATACCGAAATCATTGACTCGGTTAAACAGTCTT 1079
|||| |||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1029 TCTCGAATACGAA-CATCCAGGGCTCGATACCGAAATCATTGACTCGGTTAAACAGTCTT 1087
Query 1080 CGGGTACTTCACATGGAGGGCAACAATCTGACCGGGGAGATTCCTTTGGAGTTTAGGGAC 1139
||||| |||||| | |||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 1088 CGGGTCCTTCACCTAGAGGGCAATAATCTGACCGGAGAGATTCCTTTGGAGTTCCGGGAC 1147
Query 1140 GTGAAGCATCTAAGCGAGCTGAGGCTCAACGATAACAGTCTGACAGGTCCAGTACCGTTC 1199
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1148 GTGAAGCATCTAAGCGAGCTGAGGCTCAACGATAACAGTCTGACAGGACCAGTACCGTTC 1207
Query 1200 GAGAGAGATACAGTGTGGAGGATGAGGAGAAAGCTGAGGCTGTATAACAATGCCGGTTTG 1259
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1208 GAGAGAGACACAGTGTGGAGGATGAGGAGAAAGCTGAGGCTGTATAACAATGCTGGTTTG 1267
Query 1260 TGTCTGAACCGGGACAGTGACTTGGATGATGCATTCGGTTCAACATCTGGTTCAAGTGTC 1319
||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1268 TGTGTTAACCGGGACAGTGACTTGGATGATGCATTCGGTTCAAAATCTGGTTCAACTGTA 1327
Query 1320 AGGTTGTGTGTTGGAGAAACGCCTAGACCAGGTCCTTCCGGTACGGTACAACATCTATCT 1379
|| ||||||| || ||||||| | ||||||| ||||||||||||||| || || ||||||
Sbjct 1328 AGATTGTGTGATGCAGAAACGTCGAGACCAGCTCCTTCCGGTACGGTCCAGCACCTATCT 1387
Query 1380 AGAGAAGAAGACGGTGGTATGCCGG--G---CT-------TGTCAAGCAGTTCCAAGTCT 1427
|||||||||||||||| | |||||| | || ||||||||| ||||||||||
Sbjct 1388 AGAGAAGAAGACGGTGCTTTGCCGGACGGAGCTACGGACGTGTCAAGCACTTCCAAGTCT 1447
Query 1428 TTGGGGTTCTCCTATCTTTCTGCATTCGTTCTTGT 1462
||||||||||||||||||||||||||| |||||||
Sbjct 1448 TTGGGGTTCTCCTATCTTTCTGCATTCTTTCTTGT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895202240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5