BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927505
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80060.1 | Symbols: | Ubiquitin-like superfamily protein | ... 1240 0.0
> AT1G80060.1 | Symbols: | Ubiquitin-like superfamily protein
| chr1:30116209-30117588 REVERSE LENGTH=889
Length=889
Score = 1240 bits (671), Expect = 0.0
Identities = 741/775 (96%), Gaps = 4/775 (1%)
Strand=Plus/Plus
Query 1 AAAATCTGGGAGAATCGGCAATGCGAGAGGAGCATAGTCCGGGTAGGGGCGGTCGTCGAA 60
|||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 45 AAAATCCGGGAGAATCGGCAATGCGAGAAGAGCATAGTCCGGTTAGGGACGGTCGTCGAA 104
Query 61 GTGGAGGACTGAGGTCGTTGATAGAGCCACGCTTTTTGTCATCGTTTGCTTTAAACGACG 120
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 105 GTGGAGGACTGAGGTCGTTGATAGATCCACGCTTCTTGTCATCGTTTGCTTTAAACGACG 164
Query 121 GTGGTTCGATTTCTGGACGGAGATCTTCCTACCTGAAACTTCCTCCTCAGGGTCGTATCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 GTGGTTCGATTTCTGGACGGAGATCTTCCTACCTGAAACTTCCTCCTCAGGGTCGTATCA 224
Query 181 AGCTTTCCGTCGTTAAGCTCAACGGTTCCCTTTTCGATGTCGAAGTCGCAAAGGATTGCT 240
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 225 AGCTTTCCGTCGTTAAGCTCAACGGCTCCCTTTTCGATGTGGAAGTTGCAAAGGATTGCT 284
Query 241 CTGTGGCAGAGCTCAAAAGAGCTGTGGAACAAGTATTCACCATTTCTCCTCTGGAAGGTC 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CAGTGGCAGAGCTCAAAAGAGCTGTGGAACAAGTATTCACCATTTCTCCTCTGGAAGGTC 344
Query 301 ACGGCATGATTTCATGGTCCCACGTCTGGGGTCATTTTTGCTTGTGTTATCGAGACCAGA 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 345 ACGGCATGATTTCATGGTCTCACGTCTGGGGTCATTTTTGCTTGTGTTATCGAGACCAGA 404
Query 361 GATTAGTCAATGACAAGACGAGCATCCGTTATCTCGCTCTCAGTGACGGGGACCAATTAC 420
||||||||||||||||||| |||||||||||||||| ||||| ||| || ||||||||||
Sbjct 405 GATTAGTCAATGACAAGACTAGCATCCGTTATCTCGGTCTCAATGATGGAGACCAATTAC 464
Query 421 GTTTCGTAAGGCATTTGTCGATAGACCACTCTCCTATGAACAAAAGATCCAAGAGCCCGA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 ATTTCGTAAGGCATTTGTCGATAGACCACTCTCCTATGAACAAAAGATCCAAGAGCCCGA 524
Query 481 GTTGCAAGCGCTATCTCGAGTTGGAAGTGGAATCCAACGTCAACGAAATCCAACTACAAA 540
|||||||||| || ||||||||||| ||| ||||| ||||||||||||||| ||||||
Sbjct 525 GTTGCAAGCGGTACCTCGAGTTGGATGTGTCATCCATTGTCAACGAAATCCAAATACAAA 584
Query 541 ACCAAAACCAGAACGGTGTGGATGATGTAGCTGACAAGTGTTATCCAGGAGCACAAGACG 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 585 ACCAAAACCAGAACGGTGTGGATGATGTAGCTGAGAAGTGTTATCCAGGAGCACAAGACG 644
Query 601 AGTTACCAGCAGCAGAATTCAGACTAGTTAACTTAATTAAAGGATGGTTGCCGTATGCTG 660
||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 645 AGTTACCGGCAGCAGAATCCAGACTAGTTAACTTAATTAAAGGATGGTTGCCATATGCTG 704
Query 661 GACGTTGGGGAGTGTCCAGAAAAGGACCCGA-TAGTCGCAGTGG-CCCTACCAGATTTTC 718
||||||||||||| ||||||||||||||||| | |||||||||| |||| ||||||||||
Sbjct 705 GACGTTGGGGAGTTTCCAGAAAAGGACCCGAGT-GTCGCAGTGGTCCCT-CCAGATTTTC 762
Query 719 TTTGAAGCATTTCGGTGGCAGACCCAAGATGTAAATCCGTAAGTCACAACCTCTT 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TTTGAAGCATTTCGGTGGCAGACCCAAGATGTAAATCCGTAAGTCACAACCTCTT 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37575141956
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5