BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927506
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80050.1 | Symbols: APT2, ATAPT2, PHT1.1 | adenine phosphori... 933 0.0
> AT1G80050.1 | Symbols: APT2, ATAPT2, PHT1.1 | adenine phosphoribosyl
transferase 2 | chr1:30111514-30113324 REVERSE LENGTH=836
Length=836
Score = 933 bits (505), Expect = 0.0
Identities = 578/613 (94%), Gaps = 6/613 (1%)
Strand=Plus/Plus
Query 9 GAGTGAGTGCGAGATGTTTGCCGTGGAGAATGGGTTGCAGGGAGACCCAAGATTAAAGGC 68
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 51 GAGTGAGTGAGAGATGTTTGCCGTGGAGAATGGGTTGCAGGGAGACCCGAGATTAAAGGC 110
Query 69 CATCTCCGACGCCATTCGTGTCATTCCTCACTTCCCCAAGACTGGGATCATGTTTCAGGA 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 CATCTCCGACGCCATTCGTGTCATTCCTCACTTCCCCAAGACTGGGATCATGTTTCAGGA 170
Query 129 CATAACAACTTTGTTGCTGGATCCAGTTGCCTTCAAACATGTCGTTGATATCTTCGTTGA 188
||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 171 CATAACAACGTTGTTGCTGGATCCAGTTGCCTTTAAACATGTCGTCGACATCTTCGTTGA 230
Query 189 TCGTTACAAGCACATGAACATCTCTCTCGTCGCCGGAGTAGAGGCGAGAGGATTCATATT 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TCGTTACAAGCACATGAACATCTCTCTCGTCGCCGGAGTAGAGGCGAGAGGATTCATATT 290
Query 249 TGGACCGCCCATCGCGTTAGCCATAGGTGCCAAGTTCATTCCACTGCGCAAACCGGGAAA 308
|||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 291 TGGACCTCCCATCGCGTTAGCCATAGGTGCCAAGTTCGTTCCACTACGCAAACCGGGAAA 350
Query 309 ACTACCCGGGAAAGTGATAAGCGAAGAGTACGAGCTTGAGTATGGAAGAGATCGTCTAGA 368
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 351 ACTACCCGGGAGAGTGATAAGCGAAGAGTACGAACTTGAGTATGGAAGAGATTGTCTAGA 410
Query 369 GATGAGTGTGGAGGCTGTGAAATCCGACGAAAGAGCTCTCGTCATCGACGATTTAGTTGC 428
||||||||| || || || ||||| || ||| |||||||| |||||||||||||||||||
Sbjct 411 GATGAGTGTAGAAGCCGTCAAATCGGAGGAACGAGCTCTCATCATCGACGATTTAGTTGC 470
Query 429 CACTGGTGGGACACTCTCTGCTTCCATTAGCCTCTTGGAGCGCGCCGGGGCCGAAGTTGT 488
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 471 CACTGGTGGGACACTCTCTGCTTCCATTAACCTCTTGGAGCGTGCCGGGGCCGAAGTTGT 530
Query 489 AGAGTGTGCATGCGTTGTTGGTTTGCCTAAGTTTAAGGGGCAATGTAAGCTGAAGGGAAA 548
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 531 AGAGTGTGCATGCGTTGTTGGTTTGCCTAAGTTTAAGGGGCAGTGTAAGCTGAAGGGAAA 590
Query 549 GCCGTTGTACGTGCTGGTGGAGCCAAGCCAGTTTGATGATTTAACAACCTTATAAGCAAG 608
||| |||||||| |||||||| |||| |||||||||||| ||||| | |||||| |||
Sbjct 591 GCCTTTGTACGTTCTGGTGGAACCAAACCAGTTTGATGAATTAAC--C-TTATAA--AAG 645
Query 609 CGTTTTTCTATTC 621
| |||| ||||||
Sbjct 646 CCTTTT-CTATTC 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5