BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927514
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79960.1 | Symbols: ATOFP14, OFP14 | ovate family protein 14... 1299 0.0
> AT1G79960.1 | Symbols: ATOFP14, OFP14 | ovate family protein
14 | chr1:30079665-30080549 REVERSE LENGTH=885
Length=885
Score = 1299 bits (703), Expect = 0.0
Identities = 827/886 (93%), Gaps = 11/886 (1%)
Strand=Plus/Plus
Query 21 ATGCCAAACCCATTGCAGAAATCGCTGCATGGTTACCTGTCAAAGATCAAACGAGAGACA 80
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGCCAAACCCATTGCAGAAATCGCTGCATGGTTACCTGTCAAAGATCAAAAAAGAGACA 60
Query 81 GGGAAGCTGCAACTGTCTTCGTCGA-ATTCATTCTCATCCTCAAAGAATTGGGTCCTTGG 139
|||||||||||||||||||| || | |||||||||||||||||||||||||||| |||||
Sbjct 61 GGGAAGCTGCAACTGTCTTCCTC-ACATTCATTCTCATCCTCAAAGAATTGGGTGCTTGG 119
Query 140 TAAGCATCCCAAGAAGCTCTCCTTCTCCTTCAAGCACAGACGACGCAGCAGCAAGACCAG 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TAAGCATCCCAAGAAGCTCTCCTTCTCCTTCAAGCACAGACGACGCAGCAGCAAGACCAG 179
Query 200 ATTCAGCAAAGACGACCCCGTTCACCAGCAGGACTCCGCTCACGCCGCCACCTTGTCTGA 259
|||||||||||| || |||||| |||| |||||||| |||||||||||||||||||| ||
Sbjct 180 ATTCAGCAAAGAAGAACCCGTTTACCACCAGGACTCTGCTCACGCCGCCACCTTGTCCGA 239
Query 260 CATTGATCGTTTTCTTGAGGAAAACTTCAAATCCCTCTGCATCAGAGACGACCAGGAGGA 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CATTGATCGTTTTCTTGAGGAAAACTTCAAATCCCTCTGCATCAGAGACGACCAGGAGGA 299
Query 320 TGA---GCATCAAGTCCGGCTGACCAAAAACAAGGAGAAAAGGGAATCTTCATCAGACGA 376
||| |||||||| |||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 300 TGATCAGCATCAAGCCCGGGTGACCAAAAACAAGGAGAAAAGGGAGTCATCATCAGACGA 359
Query 377 CAGTGATGATGACGA------CGACGACTATCGTCACCGATTCGAGAGGACATGGGGACA 430
|||||||||||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct 360 CAGTGATGATGATGATGATGACGACGACTATCGTCACAGATTCGAGAGGACATGGGGACA 419
Query 431 GGCCGTCTACGACTCCCCAAAACAGCCGCCGGATTTGCTGAGGACGGAGAGACTATCTCC 490
||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||||
Sbjct 420 TGCCGTCTACGACTCCCCGAAACAGCCCCCGGATTTGCTGAGAACAGAGAGGCTATCTCC 479
Query 491 TCCTCCTGGATCATCGGAGGGGAGGCCTAGCATGGAAACGACGTCTACATCGGAGGATAG 550
||| |||||||| |||||||| ||||||||||||||||| ||||| |||||| ||| ||
Sbjct 480 TCCGCCTGGATCTTCGGAGGGCAGGCCTAGCATGGAAACAACGTCAACATCGTCGGAGAG 539
Query 551 ACAATCGAGATCCACCTTGGTGCTGCCGGAGAACTGCATCGCAGTGTTAAGATACACGGA 610
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GCAATCGAGATCCACCTTGGTGCTGCCGGAGAACTGCATCGCGGTGTTAAGATACACGGA 599
Query 611 TGAGCCGCAAGAGGACTTCAGGCTGTCCATGGTGGAGATGATGGAGTCCAAGTTAGGGAT 670
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAGCCGCAAGAGGATTTCAGGCAGTCCATGGTGGAGATGATGGAGTCCAAGTTAGGGAT 659
Query 671 GCCAGACAGCGAAGTGGATTGGGACTTGATGGAGGAGCTACTCTTCTGCTATCTGGATCT 730
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 GCGGGAAAGCGAAGTGGATTGGGACTTGATGGAAGAGCTACTCTTCTGCTATCTGGATCT 719
Query 731 CAACGACAAGAAGTCACACAAGTTCATATTAAGCGCTTTCGTTGATCTCATCATCGCTCT 790
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 720 CAACGACAAGAAGTCACACAAGTTCATACTAAGCGCTTTCGTCGATCTCATCATTGCTCT 779
Query 791 TCGTGAGAAGGAGAAGAGAATCACCAGGAAAGGCCTTGTGAGGTCGCTCAGTACTCGCGC 850
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 780 TCGTGAGAAGGAGAAGAGAATCACCAGGAAAGGTCATGTGAGGTCGCTCAGTACTCGTGC 839
Query 851 AGCCAGGGAGAGGCTGAGAAAGAGGATGATCATGAGTGACAACTAA 896
|||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 840 CGCCAGGGACAGGCTTAGGAAGAGGATGATCATGAGTGACAACTAA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44758624977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5