BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927517
Length=518
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domai... 717 0.0
AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domai... 364 4e-100
> AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:6824322-6825459 FORWARD LENGTH=1138
Length=1138
Score = 717 bits (388), Expect = 0.0
Identities = 443/470 (94%), Gaps = 2/470 (0%)
Strand=Plus/Plus
Query 1 TCGAGGTCCGTTACCGAGTCATGATGCAAACGCTTGTTCAATCCGATCTCAGATTCGGCG 60
||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 349 TCGAGTTTCGTTACCGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCG 408
Query 61 TTGTCTACTCCGACGCCGTTTCAGGTTCCGCAGCTGGAATCGGTTGCGTCGGAGAAATCG 120
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 409 TTGTCTACTCCGACGCTGTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCG 468
Query 121 TGAAGCACGAGCGTCTCGTCGATGATCGATTCTTCTTAATCTGTAAAGGT-ATGGAACGA 179
|||| ||||||||||| ||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 469 TGAAACACGAGCGTCTAGTCGACGATCGATTCTTCTTAATCTGTAAAGGTCA-GGAACGA 527
Query 180 TTTCGCGTCACAGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAGGTGACGTGGCTT 239
|| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 528 TTCCGAGTCACCGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTT 587
Query 240 GAAGATCGACCGTCCGGGGAAGAGAATCTGGACGAATTGGCGAACGAGGTTGAGGTTTTG 299
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| ||
Sbjct 588 GAAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCTG 647
Query 300 ATGATAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAG 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ATGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAG 707
Query 360 GATCTGAGGAAGAATCAGTTTCCGACTCTGTTCTCGTTTTTCGTCGGAAGCACGTTTGAA 419
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 708 GATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAA 767
Query 420 GGAGCTCCGATGGAGCAGCAAGCATTGCTGGAGCTTGAAGACACGACGGC 469
||||||||||||||||||||||| || |||||||||||||| ||| ||||
Sbjct 768 GGAGCTCCGATGGAGCAGCAAGCGTTACTGGAGCTTGAAGATACGGCGGC 817
> AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:28327886-28329764 FORWARD LENGTH=1879
Length=1879
Score = 364 bits (197), Expect = 4e-100
Identities = 382/469 (81%), Gaps = 22/469 (5%)
Strand=Plus/Plus
Query 7 TCCGTTACCG-AGTCATGATGCAAACGCTTGTTCAATCCGATCTCA-GATTCGGCGTTGT 64
|||||||||| | |||||||||| ||||| | ||||| ||||| | |||||||||| ||
Sbjct 381 TCCGTTACCGTA-TCATGATGCACACGCTCCTCCAATCTGATCT-ACGATTCGGCGTAGT 438
Query 65 CTACTCCGACGCCGTTTCAGGTTCCGCAGCTGGAA-TCGGTTGCGTCGGAGAAATCGTGA 123
|||||||| |||| || || ||||| || ||| | || || || |||||| ||||||
Sbjct 439 TTACTCCGATTCCGTCTCTGGCTCCGCCGC-AGAAGTAGGATGTGTAGGAGAAGTCGTGA 497
Query 124 AGCACGAGCGTCTCGTCGATGATCGATTCTT-CTTAATCTGTAAAGGT-ATGGAACGATT 181
| ||||||||||||||||||||||||||||| || | |||| |||||| | | |||||||
Sbjct 498 AACACGAGCGTCTCGTCGATGATCGATTCTTTCT-AGTCTGCAAAGGTCAAG-AACGATT 555
Query 182 TCGCGTCACAGA-TCTCGTCCGTACGAAACCTTACCTCGTCGC-GAAGGTGACGTGGCTT 239
|| ||||| || | |||| ||||||||||| ||||| |||| |||| | |||||||||
Sbjct 556 CCGAGTCAC-GAATGTCGTTCGTACGAAACCCTACCTTGTCGGAGAAG-TCACGTGGCTT 613
Query 240 GAAGATCGACCGTCCGGGGAAGAGAATCTGGA--CGAATTGGCGAACGAGGTTGAGGTTT 297
|||||||| || ||||| ||||| ||||| || || || || || || || || |||
Sbjct 614 GAAGATCGTCCTTCCGGTGAAGAAAATCTTGATTCG--TTAGCTAATGAAGTCGAAGTTC 671
Query 298 TGATGATAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAA-TCT 356
| |||| |||||||||| | || ||||||||||||||||| || | || || ||| | |
Sbjct 672 TAATGAAAGAAGTGATTAGGTTATCGAATAGATTGAATGGTAAGGCTGAGAAAGAAGT-T 730
Query 357 CAGGATCTGAGGAAGAATCAGTTTCCGACTCTGTTCTCGTTTTTCGTCGGAAGCACGTTT 416
|| |||||||||| ||||||||||||||| | ||| ||||| ||||||||||| ||||||
Sbjct 731 CAAGATCTGAGGAGGAATCAGTTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGTACGTTT 790
Query 417 GAAGGAGCTCCGATG-GAGCAGCAAGCATTGCTGGAGCTTGAAGACACG 464
||||||||||| | | ||||||||||| ||||| ||||||||||| |||
Sbjct 791 GAAGGAGCTCCTA-GAGAGCAGCAAGCGTTGCTTGAGCTTGAAGATACG 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24765434471
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5