BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927520

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79915.1 | Symbols:  | Putative methyltransferase family pro...   398    4e-110


> AT1G79915.1 | Symbols:  | Putative methyltransferase family protein 
| chr1:30057220-30058657 FORWARD LENGTH=939
Length=939

 Score =  398 bits (215),  Expect = 4e-110
 Identities = 372/443 (84%), Gaps = 30/443 (7%)
 Strand=Plus/Plus

Query  96   GCTCAACTGGATGAGCGATTGGCCTATTCAAGACAGCCGTG--GTGACTGCAGAGATCCC  153
            ||||||||||||||||||||||||||||||||||| || ||   || || |   | |   
Sbjct  480  GCTCAACTGGATGAGCGATTGGCCTATTCAAGACACCCATGCTCTGTCTCCTTTGTTTAT  539

Query  154  G-AAAACTTCTGTTGGAGCAAGCAGGACTTTGAACAAGTCAAATCTGCAAGCTTCATATT  212
            |  || || |||||||| ||||||||||||||||| |||||||| | |||||||||| ||
Sbjct  540  GTCAAGCTACTGTTGGAACAAGCAGGACTTTGAACTAGTCAAATGTTCAAGCTTCATTTT  599

Query  213  CGCAGCAGCACATGTGATCTACAGCGATGATCTAACCATTGCCTTATTTCGCATGTTAAG  272
            ||| |  ||| ||||||||||||||||||||||||| ||||| |||||| ||||| ||||
Sbjct  600  CGC-G--GCAGATGTGATCTACAGCGATGATCTAACAATTGCGTTATTTAGCATGCTAAG  656

Query  273  GAGAGTTATGACATTCGGTTGTG---A----C-A-A----GGATTGGAGAAACGATACAA  319
            |||||| ||| ||||||||||||   |    | | |    ||||||||||||||||||||
Sbjct  657  GAGAGTAATGTCATTCGGTTGTGACAAGGTGCTATATTTGGGATTGGAGAAACGATACAA  716

Query  320  CTTCAGCCTTGATG------A--TTGTTGCCAATGGCTACACCTGCTTTAGAAGCTACGT  371
            ||||||||||||||      |  |||||||||||||||||||||||||||||||||||||
Sbjct  717  CTTCAGCCTTGATGATCTCAACGTTGTTGCCAATGGCTACACCTGCTTTAGAAGCTACGT  776

Query  372  CAAAGAAGATGCAACAGGTGAGCAAGAAGAGAACAGGAGTTTTGTGGGCAAGCGCATCGA  431
            ||||||||||| || |||| ||||||| || |  |||||||||||||| |||||||||||
Sbjct  777  CAAAGAAGATGGAATAGGTAAGCAAGA-GA-AG-AGGAGTTTTGTGGGGAAGCGCATCGA  833

Query  432  CGTTACACAGATCCCCCAGTACTTGAAGGGTTATGATAGAGGAGACGATGTTGAGCTTTG  491
            ||| ||||| |||||||| |||||||||| ||| || |||||||| ||||||||||| ||
Sbjct  834  CGTCACACAAATCCCCCACTACTTGAAGGATTACGACAGAGGAGAAGATGTTGAGCTATG  893

Query  492  GGAGATCAAATATGTACTTTGAT  514
            ||||||||||||||||||| |||
Sbjct  894  GGAGATCAAATATGTACTTCGAT  916



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25518946676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5