BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927522
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79900.1 | Symbols: ATMBAC2, BAC2 | Mitochondrial substrate ... 1493 0.0
> AT1G79900.1 | Symbols: ATMBAC2, BAC2 | Mitochondrial substrate
carrier family protein | chr1:30052297-30053936 REVERSE LENGTH=1455
Length=1455
Score = 1493 bits (808), Expect = 0.0
Identities = 892/933 (96%), Gaps = 4/933 (0%)
Strand=Plus/Plus
Query 1 GTACAATCCCATCCTTGGGATATGGATTTCTGGCCGGAGTTTATGGCGACCAGCTGGGGA 60
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GTACAATCCCATCCTT-GG-TATGGATTTCTGGCCGGAGTTTATGGCGACCAGCTGGGGA 376
Query 61 CGAGAGTTCGTCGCCGGTGGTTTCGGAGGTGTTGCCGGAATCATCTCCGGCTACCCCTTG 120
||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct 377 AGAGAGTTCGTCGCCGGTGGTTTCGGTGGCGTCGCCGGCATCATCTCCGGCTACCCCTTG 436
Query 121 GACACCCTCAGAATTCGCCAGCAACAGAGCTCTAAATCGGGATCTGCCTTCTCCATTCTC 180
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 437 GACACCCTCAGAATTCGCCAGCAACAGAGCTCGAAATCTGGATCTGCCTTCTCCATTCTC 496
Query 181 CGGCGGATGCTCGCCGTTGAGGGTCCCACCTCTCTCTACAGAGGCATGGCTGCGCCTTTG 240
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 497 CGGCGGATGCTCGCCATTGAGGGTCCCTCCTCTCTCTACAGAGGCATGGCTGCGCCTTTG 556
Query 241 GCCTCCGTCACTTTTCAGAATGCTATGGTATTCCAGATTTACGCCATATTCTCTCGCTCC 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 557 GCCTCCGTCACTTTTCAGAATGCTATGGTATTCCAGATATACGCCATATTCTCTCGCTCT 616
Query 301 TTTGATTCCTCTGTTCCTCTGGAAGAGCCTCCTTCCTACAGAGGCGTTGCTCTTGGAGGT 360
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 617 TTTGATTCCTCTGTTCCTCTGGTAGAGCCTCCTTCCTACAGAGGCGTTGCTCTTGGTGGT 676
Query 361 GTTGCCACCGGTGCTGTCCAGAGCCTCTTGCTCACCCCTGTCGAGCTCATCAAGATTCGT 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GTTGCCACCGGTGCTGTACAGAGCCTCTTGCTCACCCCTGTCGAGCTCATCAAGATTCGT 736
Query 421 CTCCAGCTTCAGCAGACCAAGTCTGGTCCCCTCACCTTGGCCAAGAGTATCCTTAGGAGT 480
||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 737 CTCCAGCTTCAGCAGACTAAGTCTGGTCCCATCACCTTGGCCAAGAGCATCCTTAGGAGA 796
Query 481 CAGGGCC-TCAAGGGGCTTTACAAAGGCCTCACCATCACTGTGCTCCGAGATGCTCCCGC 539
||||||| || |||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 797 CAGGGCCTTC-AGGGGCTTTACAGAGGCCTCACCATCACCGTGCTCCGAGATGCTCCCGC 855
Query 540 TCATGGCCTCTACTTCTGGACCTATGAGTACGTCAGAGAAAGGCTTCACCCCGGCTGCCG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 856 TCATGGCCTCTACTTCTGGACCTATGAGTACGTCAGAGAAAGGCTTCACCCCGGCTGCAG 915
Query 600 AAAGACCGGACAAGAAAACCTCAGGACCATGCTGGTCGCTGGTGGCCTTGCTGGAGTGGC 659
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 916 AAAGACCGGACAAGAAAACCTCAGGACCATGCTCGTGGCTGGTGGCCTTGCTGGAGTGGC 975
Query 660 CAGCTGGGTCGCTTGTTATCCTCTTGATGTCGTCAAGACCAGACTGCAGCAAGGTCATGG 719
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 976 CAGCTGGGTCGCTTGTTATCCTCTTGATGTCGTCAAGACCAGACTCCAACAAGGTCATGG 1035
Query 720 GGCTTACGAGGGCATTGCCGATTGTTTTCGCAAGAGCGTCAAACAGGAAGGCTATACCGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1036 GGCTTACGAGGGCATTGCCGATTGTTTTCGCAAGAGCGTCAAACAGGAAGGCTATACGGT 1095
Query 780 TCTCTGGCGTGGCCTTGGCACTGCAGTTGCCAGGGCCTTTGTGGTCAACGGTGCTATCTT 839
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TCTCTGGCGTGGCCTCGGGACTGCAGTTGCCAGGGCCTTTGTGGTCAACGGTGCTATCTT 1155
Query 840 TGCTGCTTATGAGGTCGCCTTGCGGTGTTTTTTCACTCAATTGCCATCCCCTGATGTTGT 899
||||||||||||||| |||||||||||| | |||| ||||| ||||||||| ||| ||||
Sbjct 1156 TGCTGCTTATGAGGTAGCCTTGCGGTGTCTATTCAATCAATCGCCATCCCCAGATATTGT 1215
Query 900 CAAAGGAGAGTGAGTGAGTAAAGGGCAAAGAAG 932
|| |||||| |||||||||||||||||||||||
Sbjct 1216 CACAGGAGATTGAGTGAGTAAAGGGCAAAGAAG 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45562371329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5