BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927538
Length=1981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79750.1 | Symbols: ATNADP-ME4, NADP-ME4 | NADP-malic enzyme... 3290 0.0
> AT1G79750.1 | Symbols: ATNADP-ME4, NADP-ME4 | NADP-malic enzyme
4 | chr1:30007326-30011393 REVERSE LENGTH=2484
Length=2484
Score = 3290 bits (1781), Expect = 0.0
Identities = 1911/1976 (97%), Gaps = 0/1976 (0%)
Strand=Plus/Plus
Query 1 ACAAGGCATCCCCAGGCGCCATGATCTCTCTGAGTCCCTCGTCGTTTCTGAACAAGACGG 60
||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 195 ACAAGGCATCCCCAGACGCCATGATCTCTCTCACTCCCTCGTTGTTTCTGAACAAGACGG 254
Query 61 TTGTTCCTGGATGTTCCACACACCTCTTTCTGCGCCAGCCTAGAACTCTAATTACCCCTC 120
||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||
Sbjct 255 TTGTTCCTGGATGTTCCACACGCCTCTCTCTGCGCCAGCCTAGAACTATAATTACTCCTC 314
Query 121 CTGCTTCCTTGAGAGTGTTTTCCTCTCTCGGATCTAACCGGGATCCCAACGGCAGCCTTC 180
|||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||
Sbjct 315 CTGCTTCCTTGAGAGTCTTTTCCTCTCTCGGATCTAACCAGGATCCCACCGGCAGCGTTT 374
Query 181 TGATTGAGACCACTGCCACTTCATCCTCCTCTCTCGAGACCTCCGCCGCCGACATTGTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TGATTGAGACCACTGCCACTTCATCCTCCTCTCTCGAGACCTCCGCCGCCGACATTGTTC 434
Query 241 CCAAATCCACCGTATCTGGTGGAGTTCAGGATGTCTACGGCGAGGATGCTGCCACCGAGG 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 435 CCAAATCCACCGTATCTGGTGGAGTTCAGGATGTCTACGGCGAGGATGCCGCCACCGAGG 494
Query 301 ACATGCCTATCACTCCTTGGTCTCTCTCTGTCGCCAGTGGGTATACGTTGTTGCGTGATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 ACATGCCTATCACTCCTTGGTCTCTCTCTGTCGCCAGTGGGTATACGTTGTTGCGTGATC 554
Query 361 CACATCACAACAAAGGCCTTGCCTTTAGCCACAGGGAGCGTGACGCTCACTATCTACGCG 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 555 CACATCACAACAAAGGCCTTGCCTTTAGCCACAGAGAGCGTGACGCTCACTATCTACGCG 614
Query 421 GCCTCCTcccccccACTGTTATCTCCCAAGATCTTCAGGTTaaaaaaaTGATGCACACTC 480
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 615 GCCTCCTCCCCCCCACTGTTATCTCACAAGATCTTCAGGTTAAAAAAATTATGCACACTC 674
Query 481 TTCGTCAGTATCAAGTTCCCTTGCAGAGGTATATGGCTATGATGGATCTCCAGGAGACCA 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 675 TTCGTCAGTATCAAGTTCCCTTGCAGAAGTATATGGCTATGATGGATCTCCAGGAGACCA 734
Query 541 ACGAGAGGCTCTTTTACAAGCTTCTCATTGATCACGTCGAGGAGTTGCTACCAGTTGTCT 600
|||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 735 ACGAGAGGCTGTTTTACAAACTTCTCATTGATCACGTCGAGGAGTTGCTACCCGTTATCT 794
Query 601 ATACTCCAACGGTCGGGGAAGCCTGCCAGAAGTATGGTAGCATTTTCCTGCGCCCACAGG 660
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 795 ACACTCCAACGGTTGGGGAAGCCTGCCAGAAGTATGGTAGCATTTTCCTGCGTCCACAGG 854
Query 661 GGCTTTTTATCAGCTTGAAAGAAAAAGGCAAGATCCATGAAGTGCTGAGGAACTGGCCTG 720
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 855 GGCTTTTTATCAGCTTGAAAGAAAAAGGTAAGATTCATGAAGTGCTGAGGAACTGGCCTG 914
Query 721 AGAAGAACATTCAGGTCATTGTTGTCACTGATGGGGAGCGCATTTTAGGGTTAGGAGATC 780
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AGAAGAACATCCAGGTCATTGTTGTCACTGATGGGGAGCGCATTTTAGGGTTAGGAGATC 974
Query 781 TTGGATGTCAGGGAATGGGAATACCAGTTGGGAAACTTTCTCTCTATACAGCCCTTGGAG 840
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 975 TTGGATGTCAGGGAATGGGAATACCTGTTGGGAAACTTTCTCTCTACACAGCCCTTGGAG 1034
Query 841 GTGTCCGGCCATCTGCCTGTCTGCCCGTAACAATCGATGTTGGGACAAACAACGAAAAGC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GTGTCCGGCCATCTGCCTGTCTGCCCGTAACAATCGATGTTGGGACAAACAACGAAAAGC 1094
Query 901 TATTGAACGATGAGTTCTACATAGGACTCCGTCAAAGGAGAGCTACAGGAGAGGAATACT 960
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1095 TATTGAACGATGAGTTCTACATAGGGCTCCGCCAAAGGAGAGCTACAGGAGAGGAATACT 1154
Query 961 CTGAACTTATGCATGAATTCATGACAGCAGTCAAGCAGAACTATGGGGAGAAAGTTGTTA 1020
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1155 CCGAACTTATGCATGAATTCATGACAGCAGTCAAGCAGAACTATGGGGAGAAAGTCGTTA 1214
Query 1021 TTCAGTTTGAAGACTTTGCCAACCATAATGCTTTTGATCTGTTAGCTAAGTATGGTACAA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 TTCAGTTTGAAGACTTTGCCAACCATAATGCTTTTGATCTGTTAGCTAAGTATGGTACAA 1274
Query 1081 CACATCTTGTTTTCAATGACGATATTCAGGGAACAGCATCAGTTGTGCTTGCGGGACTTA 1140
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1275 CACATCTTGTTTTCAATGACGATATTCAGGGCACAGCATCAGTTGTGCTTGCTGGACTTA 1334
Query 1141 TTGCTGCTCTTAGATTTGTGGGGGGATCCTTGTCAAACCACAGATTCCTCTTCCTTGGTG 1200
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 1335 TCGCTGCTCTTAGATTTGTGGGGGGATCCTTGTCAGACCACAGATTCCTCTTCCTCGGGG 1394
Query 1201 CTGGAGAGGCAGGCACCGGAATAGCTGAACTAATTGCTCTTGAGATTTCAAAGAAGTCCC 1260
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 CTGGAGAGGCTGGCACTGGAATAGCTGAACTAATTGCTCTTGAGATTTCAAAGAAGTCCC 1454
Query 1261 ATATTCCATTGGAAGAGGCTCGGAAGAATATTTGGCTCGTGGATTCGAAGGGATTGATTG 1320
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1455 ATATTCCATTGGAAGAGGCTCGGAAGAATATTTGGCTCGTGGATTCAAAGGGATTGATTG 1514
Query 1321 TCAGTTCCCGGAAAGAATCCATTCAACATTTCAAAAAGCCCTGGGCTCATGACCATGAAC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 TCAGTTCCCGGAAAGAATCCATTCAACATTTCAAAAAGCCCTGGGCTCATGACCATGAAC 1574
Query 1381 CGATAAGGGAACTTGTTGATGCCGTCAAGGCAATCAAGCCGACAGTTCTGATCGGAACAT 1440
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 CAATAAGGGAACTTGTTGATGCCGTCAAGGCAATCAAGCCGACAGTTCTGATCGGAACAT 1634
Query 1441 CGGGAGTAGGTCAAACATTCACTCAAGACGTTGTGGAAACCATGGCAGAGCTAAATGAGA 1500
| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1635 CAGGTGTAGGTCAAACATTCACTCAAGACGTGGTGGAAACCATGGCAAAGCTAAATGAGA 1694
Query 1501 AACCCATCATTCTCTCTCTTTCAAACCCAACTTCTCAGTCAGAATGTACGGCGGAACAGG 1560
||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 1695 AACCCATCATTCTTTCTCTTTCGAACCCAACTTCTCAGTCAGAATGTACGGCAGAAGAGG 1754
Query 1561 CCTATACGTGGAGTCAGGGACGGGCGATCTTTGCTAGTGGAAGCCCATTTGCGCCAGTAG 1620
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1755 CCTATACGTGGAGTCAGGGACGGGCGATCTTTGCAAGTGGAAGCCCATTTGCGCCAGTAG 1814
Query 1621 AGTATGAGGGAAAGACGTTTGTGCCTGGACAGGCGAACAATGCATACATCTTTCCTGGGT 1680
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 1815 AGTATGAGGGAAAGACGTTTGTGCCTGGACAGGCAAACAACGCATACATCTTCCCTGGGT 1874
Query 1681 TTGGACTGGGGCTAATAATGTCAGGGACCATCCGAGTCCATGATGACATGCTTTTGGCCG 1740
||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct 1875 TTGGACTCGGGCTAATAATGTCAGGGACGATCCGTGTCCATGATGACATGCTTCTGGCAG 1934
Query 1741 CGTCAGAAGCTTTGGCTGAGGAACTGATGGAGGAACACTATGAGAAGGGGATGATATACC 1800
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1935 CATCAGAAGCTTTGGCTGAGGAACTGATGGAGGAACACTATGAGAAGGGGATGATATACC 1994
Query 1801 CTCCCTTCAGGAATATCAGAAAAATCTCGGCTCGTATTGCAGCTAAGGTGGCTGCCAAGG 1860
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1995 CTCCCTTCAGGAATATCAGAAAAATCTCAGCTCGTATTGCAGCTAAGGTGGCTGCCAAGG 2054
Query 1861 CCTATGAACTGGGACTGGCCACGAGGTTGCCTCAGCCCAAGGAGCTGGAGCAGTGTGCTG 1920
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 CCTACGAACTGGGACTGGCCACGAGGTTGCCTCAGCCCAAGGAGCTGGAGCAGTGTGCTG 2114
Query 1921 AGAGCAGCATGTACAGCCCTTCTTATCGAAGCTACCGCTGAGGATAAGCTTAATCT 1976
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2115 AGAGCAGCATGTACAGCCCTTCGTATCGAAGCTACCGCTGAGGATAAGCTTAATCT 2170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98142065475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5