BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927543

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36470.1 | Symbols:  | Plant protein of unknown function (DU...   355    2e-97


> AT2G36470.1 | Symbols:  | Plant protein of unknown function (DUF868) 
| chr2:15299362-15300990 REVERSE LENGTH=1629
Length=1629

 Score =  355 bits (192),  Expect = 2e-97
 Identities = 228/245 (93%), Gaps = 3/245 (1%)
 Strand=Plus/Plus

Query  145   TTGACTTCTTCCTCCGGTTCACTCAACGCGGAGATTCTTTGGGATCTATCGGAAGCAGAG  204
             ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct  890   TTGACTTCTTCCTCCGGTTCACTCAACGCCGAGATCCTCTGGGATCTATCGGAAGCAGAG  949

Query  205   TACGAAAACAACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGTCGTGGTGAATTCC  264
             |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  950   TACGAAAACAACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGTCGTTGTAAATTCC  1009

Query  265   GAGATTACGCTCAGAATCGGCGACGTTGACCGCAAGCGAGACACGTCATCATCGTCGT-G  323
             |||||||| ||| || ||||||||||||||| | |||||||||||||||||||||||| |
Sbjct  1010  GAGATTACCCTCGGAGTCGGCGACGTTGACCACGAGCGAGACACGTCATCATCGTCGTCG  1069

Query  324   -G-CGAGTCTCAAAAACAGAGAGATTCTCAGGGACTTGTTGGCTCACGACGAAGGCTCAA  381
              | |||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||
Sbjct  1070  TGGCGAGTCTCAAAAACGGAGAGATTCTCTGGAACTTGTTGGCTCACGACGAAAGCTCAA  1129

Query  382   TTCTC  386
             |||||
Sbjct  1130  TTCTC  1134



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20157367349


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5