BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927555
Length=530
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01970.1 | Symbols: WRKY45, ATWRKY45 | WRKY DNA-binding prot... 501 3e-141
> AT3G01970.1 | Symbols: WRKY45, ATWRKY45 | WRKY DNA-binding protein
45 | chr3:326397-327412 REVERSE LENGTH=914
Length=914
Score = 501 bits (271), Expect = 3e-141
Identities = 302/317 (95%), Gaps = 2/317 (1%)
Strand=Plus/Plus
Query 196 aagaag-aagaagaagaagaaagagagagaagCGAGGTACGCCTTTCAGACAAGAAGCCA 254
||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 373 AAGGAGTAAGAAGAAGAAGAAAGAGAGAGAAGCGAGGTACGCGTTCCAGACAAGAAGCCA 432
Query 255 GGTTGATATTCTGGATGATGGATACAGGTGGAGGAAGTACGGCCAAAAAGCTGTCAAGAA 314
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 433 GGTTGATATACTGGATGATGGATACAGGTGGAGGAAGTACGGCCAAAAAGCAGTCAAGAA 492
Query 315 CAATCCATTCCCCAGGAGCTATTATAAGTGCACAGAAGAAGGATGCAGAGTGAAGAAGCA 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CAATCCATTCCCCAGGAGCTATTATAAGTGCACAGAAGAAGGATGCAGAGTGAAGAAGCA 552
Query 375 AGTGCAGAGGCTATGGGGAGACGAAGGAGTGGTGGTGACCACATACCAAGGTGTGCATAC 434
||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 553 AGTGCAGAGGCAATGGGGAGACGAAGGAGTGGTGGTGACGACATACCAAGGTGTTCATAC 612
Query 435 ACATCCCGTTGATAAACCCTCAGATAATTTCAACCACATCTTGACCCAAATGCACATATT 494
|||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||
Sbjct 613 ACATGCCGTTGATAAACCCTCTGATAATTTCCACCACATCTTGACACAAATGCACATCTT 672
Query 495 CCCTCCCTTTT-CTTGA 510
||||||||||| |||||
Sbjct 673 CCCTCCCTTTTGCTTGA 689
Score = 176 bits (95), Expect = 2e-43
Identities = 103/107 (96%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1 AAACGCATAGGGAGTTAAGAAATGGAGGATAGGAGGTGTCAGGTGTTGTTTCCATGTTCA 60
||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 233 AAACGCAGAGGGAGTTAAGAAATGGAGGATAGGAGGTGTGATGTGTTGTTTCCATGTTCA 292
Query 61 TCATCGGTTGATCCTCGCTTGACAGAGTATCATGGGGTCGACAACTC 107
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 293 TCATCGGTTGATCCTCGCTTGACAGAGTTTCATGGGGTCGACAACTC 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25368244235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5