BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927561

Length=807
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02280.1 | Symbols: TOC33, ATTOC33, PPI1 | translocon at the...   569    1e-161
  AT3G01930.2 | Symbols:  | Major facilitator superfamily protein...   355    3e-97 


> AT1G02280.1 | Symbols: TOC33, ATTOC33, PPI1 | translocon at the 
outer envelope membrane of chloroplasts 33 | chr1:448463-450425 
REVERSE LENGTH=1173
Length=1173

 Score =  569 bits (308),  Expect = 1e-161
 Identities = 339/354 (96%), Gaps = 2/354 (1%)
 Strand=Plus/Plus

Query  217  GATTGAGACCAGTGATGGTTTCAAGGACAATGGGAGGGTTCACTATCAACATTATTGACG  276
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct  289  GATTGAGACCAGTGATGGTTTCAAGAACAATGGGAGGGTTCACTATCAACATTATTGACA  348

Query  277  TCCCTGGACTTGTGGAAGCTGGCTATGTCAATCACCAAGCCCTCGAGTTAATCAAAGGGT  336
             ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct  349  CCCCTGGACTTGTGGAAGCTGGATATGTCAATCACCAAGCTCTCGAGTTAATCAAAGGGT  408

Query  337  TTCTTGTGAACAGAACCATACATGTCTTGCTCTATGTTGATCGTTTGGATGTGTATAGAG  396
            |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct  409  TTCTTGTGAACAGAACAATAGATGTCTTGCTCTATGTTGATCGTTTGGATGTGTATAGAG  468

Query  397  TCGATGAGCTAGATAAGCAAGTTGTCA-AGGCAATCACCCAAACCTTTGGAAAGGAGATA  455
            ||||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||||
Sbjct  469  TCGATGAGCTAGATAAGCAAGTTGTTATA-GCAATCACCCAAACCTTTGGAAAAGAGATA  527

Query  456  TGGTGCAAAACCTTGCTTGTTCTGACTAATGCTCAGTTTTCCCCTCCCGATGAACTTTCC  515
            ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct  528  TGGTGCAAAACCTTGCTTGTTCTGACTCATGCTCAATTTTCCCCTCCCGATGAACTTTCC  587

Query  516  TACGAAACTTTTTCCTCCAAGAGATCTGATTCTCTCCTCAAAACTATCCGTGCT  569
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  588  TACGAAACTTTTTCCTCCAAGAGATCAGATTCTCTCCTCAAAACTATCCGGGCT  641


 Score =  407 bits (220),  Expect = 9e-113
 Identities = 234/241 (97%), Gaps = 0/241 (0%)
 Strand=Plus/Plus

Query  567  GCTCTTCCGAATGGTGAAGCGTGGATCCCGAACTTGGTTAAGGCGATAATTGATGTAGCA  626
            |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  741  GCTCTTCCAAATGGTGAAGCGTGGATCCCGAACTTGGTTAAGGCGATAACTGATGTAGCA  800

Query  627  ACAAACCAAAGGAAAGCAATTCATGTAGACAAGAAGATGGTAGATGGATCTTACTCTGAT  686
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  801  ACAAACCAGAGGAAAGCAATTCATGTAGACAAGAAGATGGTAGATGGATCTTACTCTGAT  860

Query  687  GATAAAGGAAAGAAACTCATCCCTCTTATCATCGGCGCTCAGTATTTGATCGTTAAGATG  746
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  861  GATAAAGGAAAGAAACTCATCCCTCTTATCATAGGCGCTCAGTATTTGATCGTTAAGATG  920

Query  747  ATTCAAGGAGCAATCAGAAATGAGATCAAGACAAGTTGAAAGCCACTTTAAGAGGCTATG  806
            ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct  921  ATTCAAGGAGCAATCAGAAATGATATCAAGACAAGTGGAAAGCCACTTTAAGAGGCTCTG  980

Query  807  A  807
            |
Sbjct  981  A  981


> AT3G01930.2 | Symbols:  | Major facilitator superfamily protein 
| chr3:319061-321560 REVERSE LENGTH=2055
Length=2055

 Score =  355 bits (192),  Expect = 3e-97
 Identities = 198/201 (99%), Gaps = 0/201 (0%)
 Strand=Plus/Plus

Query  17   AAAAATGGCGAGGACGACGCGAGAAAGAGTGAAATCGTTCATAAACAATAGATGGTTAGT  76
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  69   AAAAATGGCGAGGACGACGCGAGAAAGAGTGAAATCGTTCATAAACAATAGATGGCTAGT  128

Query  77   GTTTGTTGCGGCCATGTGGATTCAGTCTTGCGCTGGCATCGGTTACTTGTTCGGCAGCAT  136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  129  GTTTGTTGCGGCCATGTGGATTCAGTCTTGCGCTGGCATCGGTTACTTGTTCGGCAGCAT  188

Query  137  CTCTCCTGTCATCAAAAGCTCCCTCAACTACAACCAGAAGCAGCTCTCCAGGCTCGGTGT  196
            ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  189  CTCTCCTGTCATCAAGAGCTCCCTCAACTACAACCAGAAACAGCTCTCCAGGCTCGGTGT  248

Query  197  CGCCAAAGATCTCGGCGATAG  217
            |||||||||||||||||||||
Sbjct  249  CGCCAAAGATCTCGGCGATAG  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39283102954


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5