BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927565
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01910.1 | Symbols: SOX, AT-SO, AtSO | sulfite oxidase | chr... 1995 0.0
> AT3G01910.1 | Symbols: SOX, AT-SO, AtSO | sulfite oxidase | chr3:314694-317431
REVERSE LENGTH=1564
Length=1564
Score = 1995 bits (1080), Expect = 0.0
Identities = 1164/1206 (97%), Gaps = 0/1206 (0%)
Strand=Plus/Plus
Query 22 AAGAATGCCTGGAATTCGAGGTCCTTCCGAGTACTCGCAGGAACCACCTCGTCACCCTTC 81
|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 154 AAGAATGCCTGGAATTAGAGGTCCTTCGGAATACTCGCAGGAACCACCTCGTCACCCTTC 213
Query 82 TCTCAAGGTCAACGCCAAGGAACCTTTCAACGCTGAGCCTCCCCGCTCGGCCTTAGTCTC 141
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 214 TCTCAAGGTCAACGCCAAGGAACCTTTCAACGCCGAGCCTCCCCGCTCGGCCTTAGTCTC 273
Query 142 ATCTTATGTCACTCCCGTCGACCTTTTCTACAAGCGAAATCATGGTCCCATACCCATTGT 201
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 274 ATCTTATGTCACTCCCGTCGACCTTTTCTACAAGCGAAATCATGGTCCCATCCCCATTGT 333
Query 202 TGATCATCTTCAAAGCTACTCCGTCACCCTTACTGGATTGATCCAGAACCCGACAAAGCT 261
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 334 TGATCACCTTCAAAGCTACTCCGTCACCCTTACTGGATTGATCCAGAACCCGAGAAAGCT 393
Query 262 CTTTATCAAAGACATCAGGTCCCTCCCTAAGTACAATGTTACTGCTACTCTACAGTGTGC 321
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 394 CTTTATCAAAGACATCAGGTCCCTCCCAAAGTACAATGTTACTGCTACTCTTCAGTGTGC 453
Query 322 CGGTAACAGAAGAACTGCCATGAGCAAAGTTAGGAATGTTAGAGGTGTTGGATGGGATGT 381
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 CGGTAACAGAAGGACTGCCATGAGCAAAGTTAGGAATGTTAGAGGTGTTGGATGGGATGT 513
Query 382 TTCTGCTATTGGCAACGCTGTCTGGGGTGGGGCCAAATTGGCCGATGTTCTTGAGCTTGT 441
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 514 TTCTGCTATTGGCAACGCTGTCTGGGGTGGGGCGAAACTGGCCGATGTTCTTGAGCTTGT 573
Query 442 GGGGATACCAAAGCTGTCTGCTTCTACCAATTTAGGTGGCAGACATGTTGAGTTCGTCAG 501
|||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 574 GGGGATACCAAAGCTGACTGCTTCTACCAATTTAGGAGCCAGACATGTTGAGTTCGTTAG 633
Query 502 TGTTGATCGCTGTAAGGAGGAAAATGGGGGCCCTTATAAGGCCTCAATCCCTCTAAGTCA 561
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 634 TGTTGATCGCTGTAAGGAGGAAAATGGGGGCCCTTATAAGGCGTCAATCACTCTAAGTCA 693
Query 562 AGCCACTAATCCTGAAGCGGATGTTCTACTCGCTTATGAGATGAATGGAGAGACCCTGAA 621
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AGCCACAAATCCTGAAGCGGATGTTCTACTCGCTTATGAGATGAATGGAGAGACCCTGAA 753
Query 622 CAGGGATCACGGATTTCCGTTAAGGGTGGTTGTCCCAGGTGTGATTGGTGCTCGTTCCGT 681
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 754 CAGGGATCACGGATTTCCGTTAAGGGTGGTTGTCCCTGGTGTGATTGGTGCTCGTTCGGT 813
Query 682 CAAATGGCTTGATTCCATCAATGTCATCGCTGAAGAAAGCCAGGGATTCTTCATGCAAAA 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CAAATGGCTTGATTCCATCAATGTCATCGCTGAAGAAAGCCAGGGATTCTTCATGCAAAA 873
Query 742 AGATTACAAAATGTTCCCACCCTCTGTCAATTGGGATAACATCAACTGGTCCTCAAGGAG 801
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 874 AGATTACAAAATGTTTCCACCCTCTGTCAATTGGGATAATATCAACTGGTCCTCTAGGAG 933
Query 802 ACCGCAAATGGATTTCCCTGTTCAGAGTGCAATCTGCTCTGTGGAGGACGTGCAAATGGT 861
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 934 ACCGCAAATGGATTTCCCTGTTCAGAGTGCAATCTGCTCTGTGGAGGATGTGCAAATGGT 993
Query 862 GAAGCCTGGAAAGGTAAGCATCAAAGGATACGCTGTTTCAGGAGGTGGACGTGGGATAGA 921
|||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||
Sbjct 994 GAAGCCTGGAAAGGTAAGTATCAAAGGATATGCGGTTTCAGGAGGTGGACGCGGGATAGA 1053
Query 922 GCGAGTGGACATATCCCTGGATGGAGGCAAAAACTGGGTGGAAGCTTCTAGAACGCAGAA 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1054 AAGAGTGGACATATCCCTGGATGGAGGCAAAAACTGGGTGGAAGCTTCTAGAACGCAGGA 1113
Query 982 ACCAGGAAAGCATTACATCTCAGAACACAACTCCAGCGAAAAATGGGCATGGGTGTTGTT 1041
|||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 1114 ACCAGGAAAGCAGTACATCTCAGAACACAGCTCCAGTGACAAATGGGCATGGGTGTTGTT 1173
Query 1042 TGAAACCACCATTGATGTTTCACAGACTACGGAGGTCATCGCCAAAGCGGTCGATTCGGC 1101
|||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1174 TGAAGCCACCATTGATGTTTCACAGACTACAGAGGTCATCGCCAAAGCGGTTGATTCGGC 1233
Query 1102 GGCGAATGTTCAACCGGAAAATGTGGAGTCGGTGTGGAACCTAAGAGGGGTTCTAAACAC 1161
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1234 GGCGAATGTTCAACCGGAAAATGTGGAGTCGGTGTGGAACCTAAGAGGGGTTCTCAACAC 1293
Query 1162 TTCGTGGCACCGTGTACTTCTCCGGCTTGGCCACTCTAACTTGTAGACCAAGTTACCACT 1221
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 TTCGTGGCACCGTGTCCTTCTCCGGCTTGGCCACTCTAACTTGTAGACCAAGTTACCACT 1353
Query 1222 ACGCGT 1227
| ||||
Sbjct 1354 ATGCGT 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5