BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927567
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01890.1 | Symbols: | SWIB/MDM2 domain superfamily protein ... 1735 0.0
> AT3G01890.1 | Symbols: | SWIB/MDM2 domain superfamily protein
| chr3:310015-311976 FORWARD LENGTH=1898
Length=1898
Score = 1735 bits (939), Expect = 0.0
Identities = 1131/1221 (93%), Gaps = 23/1221 (2%)
Strand=Plus/Plus
Query 110 AAGGTTCCCACCACCTAAACCGCCCATTGGAGGACCT-C--C---TCCTAGTAGTCTAGA 163
|||||||||| || |||||| ||||||||||||||| | | |||| |||| | ||
Sbjct 482 AAGGTTCCCA-CA--TAAACCTCCCATTGGAGGACCTCCTGCTGTTCCTCCTAGTATGGA 538
Query 164 GTTGACTCCAGCTTCCCGGAAAAAGAAAC---A-----CA-ACAAG---TCCTTGCAGGA 211
|||||||||||||||| |||||||||||| | || ||||| |||||||||||
Sbjct 539 GTTGACTCCAGCTTCCAGGAAAAAGAAACATAAGCTTCCAGACAAGTCCTCCTTGCAGGA 598
Query 212 GCGCGTTGCAGCCGTCTTGCCCGAGTCTGCTCTCTACACACAGCTTCTTGAGTTCGAGTC 271
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 599 GCGCGTTGCTGCCGTCTTGCCCGAGTCTGCTCTCTACACACAGCTTCTTGAGTTTGAGTC 658
Query 272 TCGGGTTGATGCAGCTCTCTTTAGAAAGAAAGTTGACATCCAAGACTCCCTTAAAAACCC 331
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 659 TCGGGTTGATGCCGCTCTCTTCAGAAAGAAAGTTGACATCCAAGACTCCCTTAAGAACCC 718
Query 332 TCCCTCCATACACAAGACCCTTAGGATCTACGTTTTCAACACCTTCTCTGACCAGATCCC 391
||| ||||| || |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 719 TCCTTCCATTCAGAAGACCCTTAGGATCTACGTTTTCAACACCTTTTCCAACCAGATCCC 778
Query 392 TGGGAATGACCCTCCCACATGGACTCTTAAGATTTTCGGCAGGATCATGGATCCTGACCA 451
||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 779 TGGTCCTGACCCTCCCACATGGACTCTTAGGATTTTCGGCAGGGTCCTGGATCCTGACCA 838
Query 452 CGCTGGTGGATTAGTTCAGAGTTCAAACCCTCTTTATCCCAAGTTCTCGTCTTTCTTAAA 511
| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 839 CACTGGTGGATTAGTTCAGAATTCAAACCCACTTTATCCCAAGTTCTCGTCTTTCTTCAA 898
Query 512 AACGCTAAAGATATCCCTGGACGAGAGCCTGTATCCTGAGAGCCATCTGATCGAATGGGA 571
|||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct 899 AACGTTAAAGATATCCCTGGACCAGAGCCTGTATCCTGAGAACCATCTGATCGAAT-GGA 957
Query 572 GAA-TGCTCGATCGCCTGCTCCTCAGGAAGGGTTTGAGATCAAGAGGATAGGGTGTCAGG 630
|| | ||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 958 AAAGGGATCGATCGCCTGCTCCTCTGGAAGGGTTTGAGATAAAGAGGATAGGGTGTCAGG 1017
Query 631 AGTTTGCAGCTAAGATACTGTTGGAGATGAATTACGTCCCTGAAAAGTTCAAGACTTCTC 690
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1018 AGTTTGCAGCTACTATACTGTTGGAGATGAATTACGTCCCTGAGAAGTTCAAGACTTCTC 1077
Query 691 CTGCTTTGATGCAAGTTTTGGGCATTGAGCTTGACACTCGCCCAAGGATCATTGCGGCAA 750
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1078 CTGCTTTGATGCAAGTTTTGGGCATTGAGGTTGACACTCGCCCAAGAATCATTGCGGCAA 1137
Query 751 TCTGGCATTACGTGAAAGCCAGGAAACTGCAAAACCCTAACGACCCTTCTTTCTTTAACT 810
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1138 TCTGGCATTACGTGAAAGTCAGGAAACTGCAAAACCCAAACGACCCTTCTTTCTTCAACT 1197
Query 811 GTGATGCTGCTCTCCACAGACTTTTTGGGGAAGATAAGATGAAATTCACTATGCTCTCTC 870
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1198 GTGATGCTGCTCTCCACAGTGTTTTTGGGGAAGAGAAGATGAAATTCACTATGCTCTCTC 1257
Query 871 AGAAGATATCTCAGCACCTATCACCTCCGCCTCCCATTCCTCTTGTACACGAGATCAAGC 930
| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1258 ATAAGATATCTCAGCACCTATCACCTCCGCCTCCCATTCAGCTTGTACACAAGATCAAGC 1317
Query 931 TTTCGGGGAACAATCCAGCCATCTCAGCATGTTACGATGTGCTAGTGGACATACCATTAC 990
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1318 TTTCGGGGAACAATCCAGCCATCTCAGCATGTTACGATGTGCTTGTGGACATACCAGCAC 1377
Query 991 CGGTCCAAAGGGAGCTTTGCAATCTGCTGGCTAATGCAGAGAAGAACAAAGAGATCGAGG 1050
||||||||| |||||||| ||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 1378 CGGTCCAAACGGAGCTTTCCAATCTGCTCGCTAATCCAGAGAAGAACAAAGAGATTGAGG 1437
Query 1051 CATGTGATGAAGCCATATGCGGAGCCTTAAGGAAAATCCACGAGCACAGAAGGAGACGAG 1110
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1438 CATGTGATGAAGCCATATGCGGAGCCATAAGGAAAATCCACGAGCACAGAAGGAGACGGG 1497
Query 1111 CGTTTTTCTTGGGGTTTAGCCAGTCACCGGTGGAATTCACCAATGCCTTGATCGAATCTC 1170
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1498 CGTTTTTCTTAGGGTTTAGCCAGTCACCGGTGGAATTCACCAATGCCTTGATGGAATCTC 1557
Query 1171 AGACCAAAGATCTGAAGCTTGTAGCAGGAGAAGCAAGACGAAACGCTGAGAAAGAAGGCC 1230
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1558 AGACCAAAGATCTGAAGCTTGTTGCAGGAGAAGCAAGTCGAAACGCTGAGAAAGAAGGCC 1617
Query 1231 GATCAGAGTTCTTCAACCAGCCATGGGTGGAAGATGCTGCCATACGTTACTTGAACCGGA 1290
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1618 GATCAGAGTTCTTCAATCAGCCATGGGTGGAGGATGCTGCAATACGTTACTTGAACCGGA 1677
Query 1291 AGCCAGCAGGCGGGTAAGATG 1311
|||||||||||||||||||||
Sbjct 1678 AGCCAGCAGGCGGGTAAGATG 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65310909045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5