BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927573

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01830.1 | Symbols:  | Calcium-binding EF-hand family protei...   608    1e-173


> AT3G01830.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr3:296054-297133 FORWARD LENGTH=1080
Length=1080

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 426/471 (90%), Gaps = 14/471 (3%)
 Strand=Plus/Plus

Query  15   ATCTTCCATGAAGAGTGAAAACGTTAACAAACGTGACGACTATCAACGGGTCTTTAGCTG  74
            |||||| ||||||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct  54   ATCTTCTATGAAGAGTGAGAACGTTAACAAACGTGATGAGTATCAACGAGTCTTTAGCTG  113

Query  75   CTTTGACAGGAGCCACCAAGGGAAGGTATCCCTTTCTACCATCGAAAGATGCGTCGAAGC  134
            |||||||| |||||||||||| ||||||||  ||||||| ||||||||||||||||| ||
Sbjct  114  CTTTGACAAGAGCCACCAAGGCAAGGTATCTGTTTCTACAATCGAAAGATGCGTCGACGC  173

Query  135  TATTAAGTCTGGCAAACGTGCAGTACCTGA-C--CAAGATACTACAAATCCTAATCC--A  189
            |||||||||||||||||||||||||  ||| |   |||||||||||||||| |||||  |
Sbjct  174  TATTAAGTCTGGCAAACGTGCAGTAGTTGATCAAGAAGATACTACAAATCCAAATCCAGA  233

Query  190  -GAGTCCAC---TGATAAATCGTTGGAGCTAGAGGAATTCGTGAAGCTGGTGGAACAAGG  245
             ||||| ||   |||||||||||||||||| ||||| ||||||||| |||||||| ||||
Sbjct  234  GGAGTCGACTGATGATAAATCGTTGGAGCTCGAGGACTTCGTGAAGTTGGTGGAAGAAGG  293

Query  246  AGAGGAGGCAGACAAGGAGAAGGACCTCAAGGAAGCTTTCAAGTTGTATGAAGAGAGTAG  305
            ||||||||||||||||||||||||  | |||||||||||||||||||||| | |||| ||
Sbjct  294  AGAGGAGGCAGACAAGGAGAAGGATTTGAAGGAAGCTTTCAAGTTGTATG-A-AGAG-AG  350

Query  306  TGAAGGCATCACACCTAAAAGTTTGAAGAGGATGCTTAGTTTGTTGGGTGAGTCCAAAAG  365
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  351  TGAAGGCATCACACCAAAAAGTTTGAAGAGGATGCTTAGTTTGTTGGGTGAGTCCAAAAG  410

Query  366  TCTCAAGGATTGCGAGGTTATGATTTCGCAATTCGATATTAATAGGGATGGAATTATTAA  425
            ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct  411  TCTCAAGGACTGCGAGGTTATGATTTCCCAATTCGATATTAATAGGGATGGAATTATCAA  470

Query  426  CTTTGACGAGTTTAGGGTCATGATGCAATAACTTAATCTATATAGTTACAA  476
            |||||| |||||||||| |||||||||||||| || || || |||||||||
Sbjct  471  CTTTGATGAGTTTAGGGCCATGATGCAATAACATATTC-AT-TAGTTACAA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22655600297


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5