BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927581
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01760.1 | Symbols: | Transmembrane amino acid transporter ... 2067 0.0
AT1G61270.1 | Symbols: | Transmembrane amino acid transporter ... 1417 0.0
> AT3G01760.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:273299-275270 FORWARD LENGTH=1368
Length=1368
Score = 2067 bits (1119), Expect = 0.0
Identities = 1274/1349 (94%), Gaps = 10/1349 (1%)
Strand=Plus/Plus
Query 30 ATCCCAGATCAACAT-TT-T-GTGGAGGACCAATCCTTTGATCTGGAAGATTGGCTTCCA 86
|||| ||| |||||| || | | |||||| ||| ||||||||||||||||||||||||||
Sbjct 22 ATCCAAGACCAACATCTTGTGGAGGAGGATCAACCCTTTGATCTGGAAGATTGGCTTCCA 81
Query 87 ATCACCGCATCACGAAATGCCAATTGGTATTATTCAGCTTTCCACAACGTCACTGCCATT 146
||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 ATCACAGCATCAAGGAATGCCAATTGGTATTATTCAGCTTTCCACAACGTCACTGCCATT 141
Query 147 GTTGGTGCTGGCGTTCTCGGTCTTCCTTACGCCATGTCAGAGCTTGGATGGGGACCTGGG 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 GTTGGTGCTGGCGTTCTCGGTCTTCCTTACGCCATGTCAGAGCTTGGATGGGGACCTGGG 201
Query 207 GTTGTGGTGTTGATCCTGTCATGGGTGATCACGTTATACACCCTCTGGCAAATGATTGAG 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GTTGTGGTGTTGATCCTGTCATGGGTGATCACGTTATACACCCTCTGGCAAATGATTGAG 261
Query 267 ATGCACGAGATGTTTGAGGGGCGACGGTTCGATAGGTACCATGAGCTGGGCCAGGCAGCC 326
||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||
Sbjct 262 ATGCATGAGATGTTTGAAGGGCAACGGTTCGATAGGTACCATGAGCTGGGTCAGGCAGCC 321
Query 327 TTTGGTAAAAAACTTGGTTTGTACATCATCGTGCCGCTACAATTGCTTGTTGAAATCAGT 386
||||||||||| ||||||||||||||||||||||| |||||| | ||||| || ||||||
Sbjct 322 TTTGGTAAAAAGCTTGGTTTGTACATCATCGTGCCCCTACAACTACTTGTCGAGATCAGT 381
Query 387 GTGTGCATAGTCTATATGGTGACTGGAGGTAAATCCCTGAAGAATGTACATGACCTTGCC 446
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 382 GTGTGCATAGTCTATATGGTCACTGGAGGTAAATCCCTGAAGAATGTACATGACCTTGCT 441
Query 447 GTGGGAGATG---ACAAGTGCACAAAGATAAGAATTCAACACTTCATTATGATCTTTGCC 503
||||||||| |||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 442 TTGGGAGATGGTGACAAGTGCACAAAGCTTAGAATTCAACACTTCATTTTGATCTTTGCC 501
Query 504 TCTTCCCAGTTCGTGCTCTCCCTTCTTAAGAACTTCAACTCCATTTCTGGTGTCTCCTTG 563
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TCTTCACAGTTCGTGCTCTCCCTTCTTAAGAACTTCAACTCCATTTCTGGTGTCTCCTTG 561
Query 564 GTAGCTGCTGTCATGTCTGTCAGCTATTCCACAATTGCTTGGGTAGCCTCGCTGAGGAAG 623
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 562 GTAGCTGCTGTCATGTCTGTCAGCTATTCTACAATTGCTTGGGTAGCCTCGCTGAGGAAG 621
Query 624 GGTGCCACCACGGGGAGTGTGGAGTACGGCTATaaaaaaaGAACAACCTCCGTGCCGTTA 683
||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||| |||
Sbjct 622 GGTGCCACCACCGGGAGTGTAGAGTACGGCTATAGAAAAAGAACAACCTCAGTGCCATTA 681
Query 684 GACTTCTTAAGTGCACTAGGG-GAGATGGCTTTTGCGTACGCAGGTCATAACGTTGTTTT 742
| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 682 GCCTTCTTAAGTGCACT-GGGTGAAATGGCTTTTGCGTACGCAGGTCATAACGTTGTTTT 740
Query 743 AGAAATTCAAGCAACGATCCCATCAACACCAGAAAATCCATCAAAACGACCCATGTGGAA 802
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 741 GGAAATTCAAGCAACGATCCCATCAACACCAGAGAACCCATCAAAACGACCCATGTGGAA 800
Query 803 GGGAGCCGTTGTAGCCTATATCGTTGTAGCTTTCTGCTACTTCCCTGTGGCACTTGTAGG 862
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 801 GGGAGCGGTTGTAGCCTATATCATTGTAGCTTTCTGCTACTTCCCTGTGGCACTTGTAGG 860
Query 863 GTTCCAGACTTTTGGAAACAATGTTGAAGAAAACATCCTCGAATCACTTACAAAACCAAA 922
||| |||| |||||||||| ||||||||| | ||||||||||||||| ||||||||||
Sbjct 861 TTTCAAGACCTTTGGAAACAGTGTTGAAGAGAGCATCCTCGAATCACTAACAAAACCAAC 920
Query 923 AGCACTTGTCATTGTCGCCAACATGTTTGTGGTCATACACCTCTTGGGAAGCTACCAGGT 982
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 921 GGCACTTGTCATTGTGGCCAACATGTTTGTGGTCATACATCTCTTGGGAAGCTACCAGGT 980
Query 983 GTACGCAATGCCCGTCTTTGACATGATCGAATCTGTAATGATAAAGAAATGGCACTTCAG 1042
||| || |||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 981 GTATGCGATGCCCGTGTTTGACATGATCGAATCTGTAATGATAAGGATATGGCACTTCAG 1040
Query 1043 TCCAACAAGAGTTCTACGCTTTACCATCCGATGGACTTTTGTGGCCGCCACAATGGGAAT 1102
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1041 TCCAACAAGAGTTCTACGGTTTACCATCCGATGGACTTTTGTGGCCGCCACGATGGGAAT 1100
Query 1103 AGCGGTCGGTTTACCTTATTACAGCGCGTTGCTGTCATTTTTTGGGGGATTTGTGTTCGC 1162
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1101 AGCGGTCGGTTTACCGTATTACAGCGCATTGCTGTCATTTTTTGGGGGATTTGTGTTCGC 1160
Query 1163 CCCGACCACATACTTTATCCCATGCATCATGTGGCTGATCCTAAAGAAACCAAAGAGATT 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 CCCGACCACATACTTTATCCCATGCATCATGTGGCTGATCCTAAAGAAACCAAAGAGATT 1220
Query 1223 TAGTCTGTCATGGTGTATAAACTGGTTTTGCATCATTCTTGGGCTTGTGCTGATGATCAT 1282
|||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1221 TAGTCTCTCATGGTGTATGAACTGGTTTTGCATCATTTTTGGGCTTGTGCTGATGATCAT 1280
Query 1283 AGCACCTATTGGGGGACTGGCCAAACTAATCTATCATATCCAAAAGGGCACTCTACCTAA 1342
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1281 AGCACCTATTGGGGGACTGGCCAAACTAATCTATAATATTCAAAAGGGCACTCTACCTAA 1340
Query 1343 CTCCAA-ATGCAAATTACCTAAACACTGA 1370
|| || |||||| |||||||||||||||
Sbjct 1341 TTC-AAGATGCAACTTACCTAAACACTGA 1368
> AT1G61270.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr1:22599665-22602140 REVERSE LENGTH=1356
Length=1356
Score = 1417 bits (767), Expect = 0.0
Identities = 1117/1286 (87%), Gaps = 24/1286 (2%)
Strand=Plus/Plus
Query 39 CAACATTTTGTGGAGGACCAATCCTTTGATCTGGAAGATTGGCTTCCAATCACCGCATCA 98
||| || |||| ||||| ||||| ||||| |||||||||||||||||||| || ||||||
Sbjct 40 CAAGATCTTGTTGAGGATCAATCATTTGAGCTGGAAGATTGGCTTCCAATTACAGCATCA 99
Query 99 CGAAATGCCAATTGGTATTATTCAGCTTTCCACAACGTCACTGCCATTGTTGGTGCTGGC 158
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 100 CGAAATGCTAATTGGTACTATTCAGCTTTCCACAACGTCACTGCCATAGTTGGTGCTGGA 159
Query 159 GTTCTCGGTCTTCCTTACGCCATGTCAGAGCTTGGATGGGGACCTGGGGTTGTGGTGTTG 218
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 160 GTTCTTGGTCTCCCTTACGCCATGTCAGAACTTGGATGGGGACCTGGAGTTGTGGTGTTG 219
Query 219 ATCCTGTCATGGGTGATCACGTTATACACCCTCTGGCAAATGATTGAGATGCACGAGATG 278
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 220 ATCCTGTCATGGGTCATAACGTTATACACGTTCTGGCAAATGATTGAGATGCACGAAATG 279
Query 279 TTTGAGGGGCGACGGTTCGATAGGTACCATGAGCTGGGCCAGGCAGCCTTTGGTAAAAAA 338
||||| ||| |||||| ||||||||||| ||||| || || ||||||||||| |||||
Sbjct 280 TTTGAAGGGAAACGGTTTGATAGGTACCACGAGCTAGGACAAGCAGCCTTTGGCAAAAAG 339
Query 339 CTTGGTTTGTACATCATCGTGCCGCTACAA-TTGCTTGTTGAAATCA-GTG-TGTGCATA 395
||||||||||||||| |||||||||| ||| || |||||||| | || ||| | ||||||
Sbjct 340 CTTGGTTTGTACATCGTCGTGCCGCTTCAACTT-CTTGTTGAGA-CAAGTGCT-TGCATA 396
Query 396 GTCTATATGGTGACTGGAGGTAAATCCCTGAAGAATG-TACATGACCTTGCCGTGGGAGA 454
|| ||||||||||| |||||| |||| ||||| || | | ||| | ||| | ||||||||
Sbjct 397 GTGTATATGGTGACAGGAGGTGAATCACTGAAAAA-GATTCATCAACTTTCTGTGGGAGA 455
Query 455 -TGACAAGTGCACAAAGATAAGAA-TTCAACACTTCATTATGATCTTTGCCTCTTCCCAG 512
| || |||| | |||| | | || ||| |||||||||| |||||||||||||||| |||
Sbjct 456 CT-ACGAGTGTAGAAAGTTGA-AAGTTCGACACTTCATTTTGATCTTTGCCTCTTCACAG 513
Query 513 TTCGTGCTCTCCCTTCTTAAGAACTTCAACTCCATTTCTGGTGTCTCCTTGGTAGCTGCT 572
|| ||||| ||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 514 TTTGTGCTTTCCCTTCTTAAAAATTTCAACTCCATTTCCGGTGTCTCTTTGGTAGCTGCC 573
Query 573 GTCATGTCTGTCAGCTATTCCACAATTGCTTGGGTAGCCTCGCTGAGGAAGGGTGCCACC 632
||||||||| | |||||||||||||||||||||||||| || |||| ||||||| | |
Sbjct 574 GTCATGTCTATGAGCTATTCCACAATTGCTTGGGTAGCTTCACTGACAAAGGGTGTCGCG 633
Query 633 A-CGGGGAGTGTGGAGTACGGCTATaaaaaaaGAA-CAAC-C-TCCGTGCCGTTAGACTT 688
| | | ||| || || || ||||||| ||||| |||| | || ||||| |||| |||
Sbjct 634 AACA---A-TGTTGAATATGGATATAAAAGAAGAAACAACACCTCAGTGCCATTAGCCTT 689
Query 689 CTTAAGTGCACTAGGGGAGATGGCTTTTGCGTACGCAGGTCATAACGTTGTTTTAGAAAT 748
|||| | ||| | |||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 690 CTTAGGCGCATTGGGGGAGATGGCTTTTGCGTATGCAGGTCACAATGTTGTTTTAGAAAT 749
Query 749 TCAAGCAACGATCCCATCAACACCAGAAAATCCATCAAAACGACCCATGTGGAAGGGAGC 808
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TCAAGCAACGATTCCATCAACACCAGAAAATCCATCAAAACGACCCATGTGGAAGGGAGC 809
Query 809 CGTTGTAGCCTATATCGTTGTAGCTTTCTGCTACTTCCCTGTGGCACTTGTAGGGTTCCA 868
| ||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 810 CATTGTAGCCTATATTATTGTAGCTTTCTGTTACTTCCCTGTGGCCCTTGTAGGGTTTTG 869
Query 869 GACTTTTGGAAACAATGTTGAAGAAAACATCCTCGAATCACTTACAAAACCAAAAGC-AC 927
||| || |||||||| |||||||||||||| ||| || |||| | || ||| ||
Sbjct 870 GACATTCGGAAACAACGTTGAAGAAAACATTCTCAAAACACTC-CGGGGCCCGAAGGGAC 928
Query 928 TTGTCATTGTCGCCAACATGTTTGTGGTCATACACCTCTTGGGAAGCTACCAGGTGTACG 987
|| | ||||| |||||||| |||||| | ||||| ||| |||||||||||||||||||||
Sbjct 929 TTATAATTGTGGCCAACATTTTTGTGATTATACATCTCATGGGAAGCTACCAGGTGTACG 988
Query 988 CAATGCCCGTCTTTGACATGATCGAATCTGTAATGATAAAGAAATGGCACTTCAGTCCAA 1047
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CAATGCCCGTGTTTGACATGATCGAATCTGTAATGATAAAGAAATGGCACTTCAGTCCAA 1048
Query 1048 CAAGAGTTCTACGCTTTACCATCCGATGGACTTTTGTGGCCGCCACAATGGGAATAGCGG 1107
||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 1049 CAAGAGTTCTACGGTTTACCATCCGTTGGACTTTTGTGGCCGCCACGATGGGGATAGCAG 1108
Query 1108 TCGGTTTACCTTATTACAGCGCGTTGCTGTCATTTTTTGGGGGATTTGTGTTCGCCCCGA 1167
||| | |||| ||| ||| || ||||||||||||||||| ||||| | || |||||||
Sbjct 1109 TCGCTCTACCGCATTTCAGTGCTTTGCTGTCATTTTTTGGAGGATTCATATTTGCCCCGA 1168
Query 1168 CCACATACTTTATCCCATGCATCATGTGGCTGATCCTAAAGAAACCAAAGAGATTTAGTC 1227
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1169 CCACATACTTTATCCCTTGCATCATATGGCTGATCCTGAAGAAACCAAAGAGATTTAGTC 1228
Query 1228 TGTCATGGTGTATAAACTGGTTTTGCATCATTCTTGGGCTTGT-GCTGATGATCATAGCA 1286
| ||||||||||| || ||| ||||||||||||||||| || | | ||||||| ||||||
Sbjct 1229 TATCATGGTGTATCAATTGGATTTGCATCATTCTTGGGGTTCTAG-TGATGATTATAGCA 1287
Query 1287 CCTATTGGGGGACTGGCCAAACTAAT 1312
|||||||||||||| |||||| ||||
Sbjct 1288 CCTATTGGGGGACTCGCCAAATTAAT 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68473543380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5