BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927583

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01740.1 | Symbols:  | Mitochondrial ribosomal protein L37 |...   586    6e-167


> AT3G01740.1 | Symbols:  | Mitochondrial ribosomal protein L37 
| chr3:267821-268838 FORWARD LENGTH=821
Length=821

 Score =  586 bits (317),  Expect = 6e-167
 Identities = 371/397 (93%), Gaps = 3/397 (1%)
 Strand=Plus/Plus

Query  19   GAGATGAACCGTATTGGATTGATAAGTGG---ATCATCCAAGGATGTTGCCCGGAGGACG  75
            |||||||||||||||||||||||||| ||   ||||||||||||||| | |||||| |||
Sbjct  98   GAGATGAACCGTATTGGATTGATAAGGGGATCATCATCCAAGGATGTAGTCCGGAGAACG  157

Query  76   TTCGCTGCAGCCGCTAGTAAAGCCAAGAAAGGTGGCAAAGGAGGAGGAGCTAGCGATGCT  135
            || || ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  158  TTTGCAGCAGCAGCTAGTAAAGCCAAGAAAGGTGGCAAAGGAGGTGGAGCCAGCGATGCT  217

Query  136  CCTAAAGGTTCCACCTTGACCAAAGAGATCAAATCCACCATTGTTGTTGGTGCCAATACT  195
            ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  218  CCTAAAGGTTCCAGCTTGACCAAAGAGATCAAATCCACCACTGTTGTTGGTGCCAATACT  277

Query  196  CTCAAAGATGGATCCGATCCCAAGATCTTGCCTGACTCTGATTACCCTGATTGGCTCTGG  255
            |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  278  CTCAAAGACGGATCTGATCCCAAGATCTTGCCTGATTCTGATTACCCTGATTGGCTCTGG  337

Query  256  CATCTTCTCGATAAGCGACCAGCGCTTAGTGAGCTTAGGAGGAAGAACGTCGAGACTCTT  315
            ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  338  CATCTCCTCGATAAGCGACCAGCTCTCAGTGAGCTTAGGAGGAAGAACGTCGAGACTCTT  397

Query  316  CCCTATGATGATCTCAAACGTTTTGTCAAGCTCGACACACGAGCTAAAATCAAGGAGAAC  375
            ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct  398  CCCTACGATGATCTCAAACGTTTTGTCAAGCTCGACACACGGGGTAAAATCAAGGAGAAC  457

Query  376  AACTCTATCAAGGCCAAGAACTGAGACATGTAAGATG  412
            ||||| ||||||||||| |||||||| ||||||||||
Sbjct  458  AACTCCATCAAGGCCAAAAACTGAGAGATGTAAGATG  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5