BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927592
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01650.1 | Symbols: RGLG1 | RING domain ligase1 | chr3:24201... 1923 0.0
AT5G14420.1 | Symbols: RGLG2 | RING domain ligase2 | chr5:46481... 806 0.0
> AT3G01650.1 | Symbols: RGLG1 | RING domain ligase1 | chr3:242011-245268
FORWARD LENGTH=1785
Length=1785
Score = 1923 bits (1041), Expect = 0.0
Identities = 1179/1244 (95%), Gaps = 16/1244 (1%)
Strand=Plus/Plus
Query 87 tgctcctgctccatctccGTCTTCCAGTTATGGCCATCA-T-TA-TC-AGATGCCGCATA 142
|||||| |||||||||||| ||||||||||||||||||| | || || ||| | || ||
Sbjct 358 TGCTCCCGCTCCATCTCCGGCTTCCAGTTATGGCCATCAGTATAGTCAAGA-G-GGC-TA 414
Query 143 GT-CAAGAGGGCTATGCATCACAGCCTAATTATCCTCCACCGCCTTCACAGAGTCATGAT 201
| || | || | |||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 415 -TGCATCA--GC-A-GCATCACAGCCTAATTATCCTCCACCTCCTTCACAGAGTCAAGTT 469
Query 202 GCTGACCGGAAGAAATTTGATCGGAGGTATTCGAAAATATCGGATAACTACTCTTCTTTA 261
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 470 GCTGACAGGAAGAAATTTGATCGGAGGTATTCCAAAATATCGGATAACTACTCTTCTTTA 529
Query 262 CTGCAGGTGTCGGAGGCTCTAGGCCGTGCAGGTCTTGAATCTTCAAATCTAATCGTTGGT 321
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 530 CTGCAGGTGTCCGAGGCTCTAGGCCGTGCAGGTCTTGAATCTTCTAATCTAATCGTTGGT 589
Query 322 ATTGATTTCACCAAGAGCAATGAATGGACAGGGGCCAAGTCCTTCAATAGGAAAAGCTTG 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 ATTGATTTCACCAAGAGCAATGAATGGACAGGGGCCAAGTCCTTCAATAGGAAAAGCTTG 649
Query 382 CATCACTTAAGCAATACCCCGAATCCATACGAACAGGCAATAACTATCATAGGAAGAACC 441
|||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||||||
Sbjct 650 CATCACTTGAGCAATACCCCGAATCCATACGAGCAAGCAATTACTATCATTGGAAGAACC 709
Query 442 TTAGCCACCTTTGACGAGGATAACTTAATTCCTTGTTATGGTTTTGGAGACGCAACAACT 501
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 710 TTAGCCGCCTTTGACGAGGATAACTTAATTCCTTGTTATGGTTTTGGAGACGCATCAACT 769
Query 502 CATGATCAAGATGTGTTTAGTTTCTATCCAGAGGGTAGATTCTGTAATGGATTTGAGGAA 561
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 770 CATGATCAAGACGTGTTTAGTTTCTATCCAGAGGGAAGATTCTGTAATGGATTTGAGGAA 829
Query 562 GTATTGGCTCGTTATAGAGAAATTGTACCTCAGCTTAAGCTCGCAGGACCAACATCTTTT 621
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 830 GTATTGGCTCGTTATAGAGAAATTGTACCTCAGCTTAAGCTCGCAGGACCAACTTCTTTT 889
Query 622 GCCCCGATCATTGAAATGGCAATGACAGTGGTTGAGCAGAGTAGTGGCCAATATCATGTG 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GCCCCGATCATTGAAATGGCAATGACAGTGGTTGAGCAGAGTAGTGGCCAATATCATGTG 949
Query 682 TTAGTGATTATAGCTGATGGCCAGGTCACAAGAAGTGTCGATACCGAACATGGGCGGCTA 741
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 950 TTAGTGATTATAGCTGATGGCCAGGTCACAAGAAGTGTCGATACCGAACACGGGCGGCTA 1009
Query 742 AGTCCGCAAGAACAGAAGACGGTCGATGCAATTGTGAAAGCAAGTACCCTTCCTTTGTCA 801
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1010 AGTCCGCAAGAACAGAAGACAGTAGATGCAATTGTGAAAGCAAGTACCCTTCCTTTGTCA 1069
Query 802 ATAGTCTTAGTCGGGGTCGGGGATGGACCATGGGACATGATGCAGGAATTTGATGATAAC 861
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 ATAGTCTTAGTTGGGGTCGGGGATGGACCATGGGACATGATGCAGGAATTTGATGATAAC 1129
Query 862 ATACCTGCCCGAGCTTTCGATAACTTCCAATTTGTGAACTTCACAGAGATCATGTCAAAG 921
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1130 ATACCTGCCCGAGCTTTCGATAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAAG 1189
Query 922 AACAAAGACCAGTCTCGGAAGGAGACAGAATTCGCGCTCTCTGCTCTAATGGAGATTCCT 981
||||||||||||||||||||||||||||| || ||||| |||||||| |||||||| |||
Sbjct 1190 AACAAAGACCAGTCTCGGAAGGAGACAGAGTTTGCGCTGTCTGCTCTCATGGAGATCCCT 1249
Query 982 CCACAGTACAAAGCAACGATAGAGCTTAACCTTTTAGGGGGAAGAAATGGGAGTATCCCA 1041
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 1250 CCACAGTACAAAGCAACGATAGAGCTTAACCTTTTAGGGGTAAGAAATGGAAATATCCCA 1309
Query 1042 GAGAGAATCCCACTTGCGCCACCGGTGCAGAGCGGATCATCATTCTCTAGTTCCAGGATA 1101
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1310 CAGAGAATCCCACTTCCGCCACCGGTGCAGAGTGGATCATCATTCTCTAGTTCCCGGATA 1369
Query 1102 CCGAGTTTTGAACCGAGCGTACCTACTTATCCATTTGAGAGCAAGCATATGAGCAGTGGT 1161
|||| |||||||||||| |||||| |||||||||||||||||||||| || | ||| ||
Sbjct 1370 CCGAATTTTGAACCGAGTGTACCTCCTTATCCATTTGAGAGCAAGCAAAT--G-AGTAGT 1426
Query 1162 GCAGACGATAACCAGCTATGTCCGATATGTCTGAGCAACCCGAAAAACATGGCGTTTGGT 1221
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 GCAGACGATATTCAGCTATGTCCGATATGTCTGAGCAACCCGAAAAACATGGCGTTTGGT 1486
Query 1222 TGTGGCCATCAGACTTGTTGTGAATGCGGACCAGATCTTAAAGTGTGTCCGATTTGTCGT 1281
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1487 TGTGGCCATCAGACTTGTTGTGAATGCGGACCAGATCTTAAAGTGTGTCCTATTTGTCGT 1546
Query 1282 GCCCCGATCCAGACCAGAATCAAGCTCTACTAACAACACCATTG 1325
|| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1547 GCGCCGATCCAGACCAGAATCAAGCTTTACTAACAACACCATTG 1590
Score = 169 bits (91), Expect = 8e-41
Identities = 164/194 (85%), Gaps = 25/194 (13%)
Strand=Plus/Plus
Query 1 CTCATCAAAGTTATCCTCAATATGGACCTGATAGCTACAACTAtcctcctccacccactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 CTCATCAAAGTTATCCTCAATATGGACCTGATAGCTACAACTATCCTCCTCCACCCACTT 227
Query 61 atactccc--tcc-tc-c-tgctccgg-tgcctgctcc--tgc-t-c-c-atctccGTCT 108
|| ||||| ||| || | |||||| | | |||||||| ||| | | | ||||||| ||
Sbjct 228 ATGCTCCCGCTCCATCTCCTGCTCCTGCT-CCTGCTCCGGTGCCTGCTCCATCTCCGGCT 286
Query 109 TCCAGTTATGGCCATCATTATCAGATGCCGCATAGTCAAGAGGGCTATGCATCACAGCCT 168
||||||||||||| | | ||| | ||||||||||||| |||||||||||||||
Sbjct 287 TCCAGTTATGGCC--C-T---CAG-T-----ATAGTCAAGAGGGTTATGCATCACAGCCT 334
Query 169 AATTATCCTCCACC 182
||| ||||||||||
Sbjct 335 AATAATCCTCCACC 348
> AT5G14420.1 | Symbols: RGLG2 | RING domain ligase2 | chr5:4648111-4650698
REVERSE LENGTH=1786
Length=1786
Score = 806 bits (436), Expect = 0.0
Identities = 755/907 (83%), Gaps = 29/907 (3%)
Strand=Plus/Plus
Query 171 TTATCCTCCACCGCCTTCACAGAGTCAT-G-A-TGCTGACCGGAAGAAATTTGATCGGAG 227
|||| || |||||||||| || ||| || | | || | | ||||| || || || |
Sbjct 360 TTATTCTGCACCGCCTTCTCAAAGTTATGGTAGTGATAATAAGAAGAGGTTGGAGCGCAA 419
Query 228 GTATTCGAAAATATCGGATAACTACTCTTCTTTACTGCAGGTGTCGGAGGCTCTAGGC-C 286
|||||||||||| || ||| | ||||||||||| ||||||| |||||||||| || |
Sbjct 420 GTATTCGAAAATTTCTGATGATTACTCTTCTTTGGAGCAGGTGACGGAGGCTCT-TGCAC 478
Query 287 GTGCAGGTCTTGAATCTTCAAATCTAATCGTTGGTATTGATTTCACCAAGAGCAATGAAT 346
| || ||||| |||||||||||||| |||||||||||||||||||| ||||| || ||||
Sbjct 479 GGGCGGGTCTAGAATCTTCAAATCTCATCGTTGGTATTGATTTCACTAAGAGTAACGAAT 538
Query 347 GGACAGGGGCCAAGTCCTTCAATAGGAAAAGCTTGCATCACTT-A-A-GCAATA-CCCCG 402
|||||||||||| ||||||||||||||||||||| | ||||| | | ||| || |||
Sbjct 539 GGACAGGGGCCAGGTCCTTCAATAGGAAAAGCTT--A-CACTTCATAGGCAGTAGTCCC- 594
Query 403 AATCCATACGAACAGGCAATAACTATCATAGGAAGAACCTTAGCCACCTTTGACGAGGAT 462
||||| || ||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 595 AATCCTTATGAACAAGCGATAACTATCATAGGAAGAACCTTAGCCGCCTTTGACGAGGAC 654
Query 463 AACTTAATTCCTTGTTATGGTTTTGGAGACGCAACAACTCATGATCAAGATGTGTTTAGT 522
||||| ||||| ||||||||||||||||| ||| |||| ||||||||||| ||||| |||
Sbjct 655 AACTTGATTCCATGTTATGGTTTTGGAGATGCATCAACACATGATCAAGACGTGTTCAGT 714
Query 523 TTCTATCCAGAGGGTAGATTCTGTAATGGATTTGAGGAAGTA-TTGGCTCGTTATAGAGA 581
||| || |||||| |||||||||||||||||||||||||||| || | || |||| ||
Sbjct 715 TTCAATTCAGAGGATAGATTCTGTAATGGATTTGAGGAAGTACTTTCC-CGGTATA-AGG 772
Query 582 A-ATTGTACCTCAGCTTAAGCTCGCAGGACCAACATCTTTTGCCCCGATCATTGAAATGG 640
| || || ||||| |||||||| ||||| ||||| || ||||| |||||||| || ||||
Sbjct 773 AGATCGTGCCTCAACTTAAGCTTGCAGGGCCAACCTCCTTTGCTCCGATCATCGATATGG 832
Query 641 CAATGAC-AGTGGTTGAGCAGAGTAGTGGCCAATATCATGTGTTAGTGATTATAGCTGAT 699
| ||||| | || ||||||||||| |||| |||||||| || ||||||| ||||| |||
Sbjct 833 CCATGACCATTG-TTGAGCAGAGTGGTGGGCAATATCACGTCCTAGTGATAATAGCAGAT 891
Query 700 GGCCAGGTCACAAGAAGTGTCGATACCGAACATGGGCGGCTAAGTCCGCAAGAACAGAAG 759
|| ||||| ||||||||||| || || ||| |||| | | ||||||| ||||||||||||
Sbjct 892 GGGCAGGTTACAAGAAGTGTTGACACGGAAAATGGACAGTTAAGTCCACAAGAACAGAAG 951
Query 760 ACGGTCGATGCAATTGTGAAAGCAAGTACCCTTCCTTTGTCAATAGTCTTAGTCGGGGTC 819
||||| ||||| || ||| |||| |||| |||||| | ||||| ||||||||||||||
Sbjct 952 ACGGTAGATGCGATCGTGCAAGCGAGTAAGCTTCCTCTATCAATCGTCTTAGTCGGGGTG 1011
Query 820 GGGGATGGACCATGGGACATGATGCAGG-AATTTGATGATAACATACCTGCCCGAGC-TT 877
||||||||||| |||||||||||| ||| ||||||| ||||| || || ||| |||| ||
Sbjct 1012 GGGGATGGACCTTGGGACATGATG-AGGGAATTTGACGATAATATTCCGGCCAGAGCGTT 1070
Query 878 TCGATAACTTCCAATTTGTGAACTTCACAGAGATCATGTCAAAGAACAAAGAC-CAGTC- 935
| |||||||||||||| ||||||||||||||||||||| |||||||||||| | || ||
Sbjct 1071 T-GATAACTTCCAATTCGTGAACTTCACAGAGATCATGGCAAAGAACAAAG-CTCAATCC 1128
Query 936 TCGGAAGGAGACAGAATTCGCGCTCTCTGCTCTAATGGAGATTCCTCCACAGTACAAAGC 995
| | ||||| ||||| || || || |||||||| ||||||||||||| ||| ||||| ||
Sbjct 1129 TTG-AAGGAAACAGAGTTTGCCCTTTCTGCTCTCATGGAGATTCCTCAACAATACAAGGC 1187
Query 996 AACGATAGAGCTTAACCTTTTAGGGGGAAGAAATGGG-AGTATCCCAGAGAGAATCCCAC 1054
|| |||||||||||||||||||| |||||||||| | |||||| |||||| |||| |
Sbjct 1188 GACAATAGAGCTTAACCTTTTAGGAAGAAGAAATGGATA-TATCCCGGAGAGATTCCCTC 1246
Query 1055 TTGCGCC 1061
|| ||||
Sbjct 1247 TTCCGCC 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5