BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927596
Length=2507
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01610.1 | Symbols: CDC48C, emb1354 | cell division cycle 48... 4024 0.0
AT1G16550.1 | Symbols: | pseudogene, putative cell division cy... 1312 0.0
> AT3G01610.1 | Symbols: CDC48C, emb1354 | cell division cycle
48C | chr3:231651-235214 FORWARD LENGTH=2756
Length=2756
Score = 4024 bits (2179), Expect = 0.0
Identities = 2402/2510 (96%), Gaps = 13/2510 (1%)
Strand=Plus/Plus
Query 3 AGCTTCTAATTCAGTACGATGGTGAGGAGAGGTCGCGGCGGCGGCGGCGGTGGTATGGGC 62
||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||
Sbjct 120 AGC-TCTAATTCAGTACGATGGGGAGGAGAGGT--C-GCGGCGGCGGCGGTGGTATGGGC 175
Query 63 GGAGGAATCAATCGTAGATATCTGAGTAAAGTTATGGATTCATGCGGCAAGGATTTAGCT 122
||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||
Sbjct 176 GGAGGAATCAATCGTAGATATCTGAGTCAAGTTATGGATACGTGCGGCAAGGATTTATCT 235
Query 123 ACGGCGGAGGACATCGTCGATGATCTCCGTTCCAGGTACGGTGATTTTGCGAGGTTGACT 182
||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 236 ACGGCGGAGGACATCGTTGATGATCTTCGTTCCAGGTACGGCAATTTTGCGAGGTTGACT 295
Query 183 CGGCAGGTGCTTCTGCTCAATGTCAGGCAAGTCCTTAATGTCAGAAACAACAAGCGGGTT 242
||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 296 CGGCAAGTGCTTCTACTCAATGTCAGGCAAGTCCTTAATGTTAGAAACAACAAGAGGGTT 355
Query 243 AAAGACGAAGATGAAGATGACAACAATGGCGATGAGGAAGGTTCTGCTGCTCAGAGGAAG 302
||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 356 AAAGACGAAGATGAAGATGACAACATTGGAGATGAGGAAGGTTCTGCTTCTCAGAGGAAG 415
Query 303 AAACAGAGGCGGGTTGATGAGAAAGAGGAGAAGTTGCAGCGAGCGGAGCAGTCGCATCTG 362
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 416 AAACAGAGACGGGTTGATGAGAAAGAGGAGAAATTGCAGCGAGCGGAGCAGTCGCATTTA 475
Query 363 AGGAGGAGAAATATGGAACGTTCAGTGTCTTCTTCTCCG---TCTTCTTCTTCGTCGGAA 419
|||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 476 AGGAAGAGGAATATGGAACGTTCAGTGTCTTCTTCTCCGTCTTCTTCTTCTTCTTCGGAA 535
Query 420 GATAGTGGTGATGTGTCGACTTCTGAGGACGCGATTTATGGCGAGAAGCTGAGTCCGCCG 479
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 536 GACAGTGGTGATGTGTCGACTTCTGAGGACGCGGTTTATGGCGAGAAGCTGAGTCCGCCG 595
Query 480 CGGTTTGATTTGATCAATGACAGTCTACGAGATAACTACGCCAAGTTGAACAGCTCCTCG 539
||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 596 CGGTTTGATCTGATCAATGACAGTCTAAGAGATAACTACGCTAAGTTGAACAGCTCCTCG 655
Query 540 AAGAAACCAATTGGGTCGCCTGTGGAAAAGAATGTGGAAGTTGAGACTGTGAGCAACAAA 599
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 656 AAGAAACCAATTGGGTCGCCTGCGGAAAAGAATGTGGAAGTTGAGACTGTGAGCAACAAA 715
Query 600 GGTAGGAGCAAGTTGGCTACAATGGGGGCCAGAAAGGAGGCTAAAGGCTCTCTTTCCCTC 659
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 716 GGTAGAAGCAAGTTGGCTACAATGGGGGCCAGAAAGGAGGCTAAAGTTTCTCTTTCCCTC 775
Query 660 AGTGGAACTACTGGTAATGGTGATTTGGAAGTTGAGGGTAATAAAGGACCTACTTTTAAA 719
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 776 AGTGGAGCTACTGGTAATGGTGATTTGGAAGTTGAGGGTACTAAAGGACCTACTTTTAAA 835
Query 720 GATTTTGGTGGGATTAAGAAAGTGTTGGATGAATTGGAGATGAATGTTCTATTCCCCATT 779
|| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 836 GACTTTGGTGGGATTAAGAAAATATTGGATGAATTGGAGATGAATGTTCTATTCCCCATT 895
Query 780 CTCAATCCTGAGCCGTTTAAGAAGATTGGAGTGAAGCCACCAAGCGGGATTCTATTCCAT 839
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 896 CTCAATCCTGAGCCGTTTAAGAAGATTGGAGTGAAGCCACCAAGTGGGATTCTATTTCAT 955
Query 840 GGACCACCTGGCTGTGGAAAGACCAAGTTGGCTAATGCCATTGCCAATGAAGTTGGTGTT 899
||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||
Sbjct 956 GGACCACCTGGCTGTGGGAAGACTAAGTTGGCCAATGCCATTGCCAATGAAGCTGGTGTT 1015
Query 900 CCGTTTTTTAAGATTTCAGCCACAGAGGTGGTTTCTGGTGTTTCTGGTGCTTCTGAAGAG 959
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1016 CCGTTTTATAAGATTTCAGCCACAGAGGTGATTTCTGGTGTTTCTGGTGCTTCTGAAGAG 1075
Query 960 AATATTAGAGAGCTCTTCTCTAAAGCATATAGGACTGCGCCTTCGATAGTCTTTATCGAT 1019
||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1076 AATATCAGAGAGCTCTTTTCTAAAGCATATAGGACTGCGCCTTCGATTGTGTTTATCGAT 1135
Query 1020 GAGATTGACGCGATTGGATCAAAGAGAGAAAACCAGCAAAGGGAGATGGAGAAGCGGATA 1079
|||||||| |||||||| ||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1136 GAGATTGATGCGATTGGTTCAAAGAGAGAGAATCAGCAAAGAGAGATGGAGAAGCGGATA 1195
Query 1080 GTAACACAATTGTTGACTTGTATGGATGGACCCGGTAACAAAGGCGATAAAAATGTTCCT 1139
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1196 GTAACACAATTGTTGACTTGTATGGATGGACCTGGTAACAAAGGCGATAAAAATGCTCCT 1255
Query 1140 GATTCTAGTGCTGGATTTGTTCTCGTCATTGGAGCTACAAATAGGCCGGATGCTCTTGAT 1199
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1256 GATTCTAGTGCTGGTTTTGTTCTTGTCATTGGAGCTACAAATAGGCCTGATGCTCTTGAT 1315
Query 1200 CCTGCTTTGAGGAGAAGTGGACGATTTGAATGTGAGATTGCTCTAACTGCTCCAGATGAA 1259
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1316 CCTGCTTTGAGGAGAAGTGGACGATTTGAAACTGAGATCGCTCTAACTGCTCCAGATGAA 1375
Query 1260 GACGCAAGGGCTGAGATACTCTCTGTTGTAGCCCAAAAACTTAGATTAGAAGGACCCTTT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GACGCAAGGGCTGAGATACTCTCTGTTGTAGCCCAAAAACTTAGATTAGAAGGACCCTTT 1435
Query 1320 GACAAGAAAAGAATAGCTCGTTTAACACCGGGTTTTGTTGGAGCTGATTTGGAGAGTGTT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GACAAGAAAAGAATAGCTCGTTTAACACCGGGTTTTGTTGGAGCTGATTTGGAGAGTGTT 1495
Query 1380 GCTTACTTGGCTGGCAGGAAAGCCATAAAGAGAATCTTAGATTCAAGAAAATCTGAACAG 1439
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1496 GCTTACTTGGCTGGCAGGAAAGCCATTAAGAGAATCTTGGATTCAAGGAAATCTGAACAG 1555
Query 1440 TCTGGGGACGGTGAAGACGATAAATCTTGGCTGAGGATGCCCTGGCCAGAAGAAGAGTTG 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TCTGGGGACGGTGAAGACGATAAATCTTGGCTGAGGATGCCCTGGCCAGAAGAAGAGTTG 1615
Query 1500 GAAAAGCTCTTTGTCAAAATGTCTGATTTCGAGGAAGCAGTGAATCTAGTTCAGGCATCT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GAAAAGCTCTTTGTCAAAATGTCTGATTTCGAGGAAGCAGTGAATCTAGTTCAGGCATCT 1675
Query 1560 TTAACAAGAGAAGGATTCTCTATCGTGCCTGATGTCAAGTGGGATGATGTTGGTGGACTT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TTAACAAGAGAAGGATTCTCTATCGTGCCTGATGTCAAGTGGGATGATGTTGGTGGACTT 1735
Query 1620 GACCATCTACGACTTCAATTCAATCGTTATATAGTGAGGCCTATCAAAAAGCCTGATATT 1679
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1736 GACCATCTACGACTTCAATTCAACCGTTATATAGTGAGGCCTATCAAAAAGCCTGATATT 1795
Query 1680 TATAAGGCTTTCGGGGTAGACTTAGAGACCGGATTTTTGCTCTATGGACCACCGGGTTGT 1739
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1796 TATAAGGCTTTTGGGGTAGACTTAGAGACAGGGTTTTTGCTCTATGGACCACCGGGTTGT 1855
Query 1740 GGCAAGACATTGATTGCAAAGGCAGCTGCTAACGAGGCTGGAGCTAATTTCATGCACATC 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 GGCAAGACATTGATTGCAAAGGCAGCTGCTAACGAGGCTGGAGCTAATTTCATGCACATC 1915
Query 1800 AAGGGTGCAGAACTTCTAAATAAATACGTTGGAGAAAGTGAGCTTGCTATTCGTACGTTA 1859
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 AAGGGTGCCGAACTTCTAAATAAATACGTTGGAGAAAGTGAGCTTGCTATTCGTACGTTG 1975
Query 1860 TTTCAGCGCGCCCGGACATGTGCACCATGTGTAATCTTCTTTGATGAGGTGGATGCTTTG 1919
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TTTCAGCGAGCTCGGACATGTGCACCATGTGTAATCTTCTTTGATGAGGTGGATGCTTTG 2035
Query 1920 ACAACAAGTCGTGGCAAAGAAGGTGCTTGGGTTGTGGAACGACTTTTGAACCAGTTTCTT 1979
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2036 ACAACAAGTCGTGGCAAAGAAGGTGCTTGGGTTGTTGAACGGCTTTTGAACCAGTTTCTT 2095
Query 1980 GTTGAGCTGGATGGTGGAGAGAGGCGTAATGTATATGTAATTGGAGCTACAAACAGGCCA 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 GTTGAGCTGGATGGTGGAGAGAGGCGTAATGTATATGTAATTGGAGCTACAAACAGGCCA 2155
Query 2040 GATGTAGTTGATCCTGCTTTCTTGAGACCGGGTAGGTTTGGGAATCTTCTTTATGTACCC 2099
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2156 GATGTAGTTGATCCTGCTTTCTTGAGACCGGGTAGATTTGGGAATCTTCTTTATGTACCC 2215
Query 2100 CTCCCCAACGCGGATGAGCGAGCTTCAATTCTAAAAGCTATTGCAAGGAAGAAACCGATA 2159
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2216 CTCCCCAACGCAGATGAGCGTGCTTCAATTCTAAAAGCTATTGCAAGGAAGAAACCGATA 2275
Query 2160 GATCCTAGTGTTGATCTGGTTGGAATCGCAAAGA-TGAACTGTGAAGGTTTCAGCGGAGC 2218
||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||
Sbjct 2276 GATCCTAGTGTTGATCTGGATGGAATTGCAAAGAAT-AACTGTGAAGGTTTCAGCGGAGC 2334
Query 2219 TGATCTCGCGCACTTGGTGCAAAAAGCTACATTCCAAGCAGTGGAGGAAATGATAGGCTC 2278
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2335 TGATCTCGCACACTTGGTGCAAAAAGCTACATTCCAAGCAGTGGAGGAGATGATAGGCTC 2394
Query 2279 CAGTGAGTCGTCTGAAGATGATGTTTCAGATATAACCCAGTGTACAATCAAGTCAAAACA 2338
||||||||||||||||||||||||| |||||||||| ||||||||||||||| | | ||
Sbjct 2395 CAGTGAGTCGTCTGAAGATGATGTTACAGATATAACGCAGTGTACAATCAAGACGAGGCA 2454
Query 2339 TTTCGAGCAAGCCTTGTCCTTAGTCTCGCCCTCTGTGAACAAACAGCAAAGAAAACACTA 2398
||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 2455 TTTCGAGCAAGCCTTGTCCTTAGTCTCACCATCTGTGAACAAACAGCAAAGAAGACACTA 2514
Query 2399 TGACGCACTATCAAAAAAGCTTCAAGAAAGCGTTGGAAAGAACACTGAAGAACAAGTCAC 2458
|||||||||||||| ||||||||||||||||||||| | |||||||||| ||||||||
Sbjct 2515 TGACGCACTATCAACAAAGCTTCAAGAAAGCGTTGGGAGGAACACTGAA---CAAGTCAC 2571
Query 2459 CATAGGGCCATCTTTTACCCTCGAGTAAAAACACTCCT-ACTTATAGAAT 2507
|||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 2572 CATAGGGCCATCTTTTACCCTCGAGTAAAAACACTCTTTACTTATAGAAT 2621
> AT1G16550.1 | Symbols: | pseudogene, putative cell division
cycle protein, blastp match of 53% identity and 2.4e-136 P-value
to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695)
corresponds to a region of the predicted gene.~similar to
valosin-containing protein (U20213) {Oryza sativa (japonica
cultivar-group)} | chr1:5665907-5668209 FORWARD LENGTH=2303
Length=2303
Score = 1312 bits (710), Expect = 0.0
Identities = 972/1095 (89%), Gaps = 32/1095 (3%)
Strand=Plus/Plus
Query 444 GAGGACGC-GATTTATGGCGAGAAGCTGAGTCCGCCGCGGTTTGATTTGATCAATGACAG 502
|||||||| | |||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 50 GAGGACGCTG-TTTACAGCGAGAAGCTGAGT---CCAAGGTTTGATTTGATCAATGACAG 105
Query 503 TCTACGAGATAACTACGCCAAGTTGAACAGCTCCTCGAAGAAACCAATTGGGT---CGCC 559
||||||||||||||| |||||| | || | | |||||||||||||||| ||||
Sbjct 106 TCTACGAGATAACTATGCCAAGCT-AA-A------C-AAGAAACCAATTGGGTCGCCGCC 156
Query 560 TGTGGAAAAGAATGTGGAAGTTGAGACTGTGAGCAACAAAGGTAGGAGCAAGTTGGCTAC 619
|||||| |||||||| |||||||| |||||| | ||||||||||| || ||| |||||||
Sbjct 157 TGTGGAGAAGAATGTTGAAGTTGAAACTGTGGGTAACAAAGGTAGAAGTAAGATGGCTAC 216
Query 620 AATGGGGGCCAGAAAGGAGGCTAAAGGCTCTCTTTCCCTCAGTGGAACTACTGGTAATGG 679
||||||| ||||||||| |||||| ||| |||||| ||||||||||||||||||||||
Sbjct 217 AATGGGGTTGAGAAAGGAGTCTAAAGACTCACTTTCCATCAGTGGAACTACTGGTAATGG 276
Query 680 TGATTTGGAAGTTGAGGGTAATAAAGGACCTACTTTTAAAGATTTTGGTGGGATTAAGAA 739
||||||||| || | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TGATTTGGATGTAGTGGGTGATAAAGGACCTACTTTTAAAGATTTTGGTGGGATTAAGAA 336
Query 740 AGTGTTGGATGAATTGGAGATGAATGTTCTATTCCCCATTCTCAATCCTGAGCCGTTTAA 799
||||||||||||| |||||| ||||||| | ||||| |||||||||||||| ||||||||
Sbjct 337 AGTGTTGGATGAACTGGAGAGGAATGTTTTGTTCCCGATTCTCAATCCTGAACCGTTTAA 396
Query 800 GAAGATTGGAGTGAAGCCACCAAGCGGGATTCTATTCCATGGACCACCTGGCTGTGGAAA 859
|||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 397 GAAGATTGGAGTTAAGCCACCGAGTGGGATTCTATTTCATGGACCACCTGGCTGTGGGAA 456
Query 860 GACCAAGTTGGCTAATGCCATTGCCAATGAAGTTGGTGTTCCGTTTTTTAAGATTTCAGC 919
|||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 457 GACCAAGTTGGCTAATGCTATAGCCAATGAAGTTGGTGTTCCGTTTTATAAGATTTCAGC 516
Query 920 CACAGAGGTGGTTTCTGGTGTTTCTGGTGCTTCTGAAGAGAATATTAGAGAGCTCTTCTC 979
||||| |||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 517 TACAGATGTGGTTTCTGGTGTCTCTGGTGCTTCTGAAGAGAATCTTAGAGAGCTTTTCTC 576
Query 980 TAAAGCATATAGGACTGCGCCTTCGATAGTCTTTATCGATGAGATTGACGCGATTGGATC 1039
|||||| ||||||||||| ||||| || || ||||||||||||||||| |||||||||||
Sbjct 577 TAAAGCGTATAGGACTGCACCTTCCATTGTGTTTATCGATGAGATTGATGCGATTGGATC 636
Query 1040 AAAGAGAGAAAACCAGCAAAGGGAGATGGAGAAGCGGATAGTAACACAATTGTTGACTTG 1099
|||||| ||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct 637 AAAGAGGGAAAATCAGCAAAGGGAGATGGAAAAGCGGATTGTAACGCAATTATTGACTTG 696
Query 1100 TATGGATGGACCCGGTAACAAAGGCGATAAAAATGTTCCTGATTCTAGTGCTGGATTTGT 1159
|||||||||||| |||||||| || | ||||| ||||||| |||||||||
Sbjct 697 TATGGATGGACCTGGTAACAATGG---T---------CCTGAGTCTAGTGTTGGATTTGT 744
Query 1160 TCTCGTCATTGGAGCTACAAATAGGCCGGATGCTCTTGATCCTGCTTTGAGGAGAAGTGG 1219
|||||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||||
Sbjct 745 TCTCGTTATTGGAGCTACAAAT-GGCCTGATGTTCTTGATCCTGCTTTGAGGAGAAGTGG 803
Query 1220 ACGATTTGAATGTGAGATTGCTCTAACTGCTCCAGATGAAGACGCAAGGGCTGAGATACT 1279
||||||||||||||||||||||||| || |||||||||||| ||||| |||||||||||
Sbjct 804 ACGATTTGAATGTGAGATTGCTCTAGGTGTTCCAGATGAAGATGCAAGAGCTGAGATACT 863
Query 1280 CTCTGTTGTAGCCCAAAAACTTAGATTAGAAGGACCCTTTGACAAGAAAAGAATAGCTCG 1339
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 864 TTCTGTTGTAGCCCAAAAACTTAGACTAGAAGGGCCCTTTGACAAGAAAAGAATAGCTCG 923
Query 1340 TTTAACACCGGGTTTTGTTGGAGCTGATTTGGAGAGTGTTGCTTACTTGGCTGGCAGGAA 1399
|||||| ||||||||||||||||| ||||||||| |||||||| || ||||||||||||
Sbjct 924 TTTAACGCCGGGTTTTGTTGGAGCAGATTTGGAGGGTGTTGCTAACATGGCTGGCAGGAT 983
Query 1400 AGCCATAAAGAGAATCTTAGATTCAAGAAAATCTGAACAGTCTGGGGACGGTGAAGACGA 1459
|||| |||||||||||| ||||||||||||||| ||| | |||||||| |||||| ||
Sbjct 984 TGCCACAAAGAGAATCTTGGATTCAAGAAAATCTCAACTGGCTGGGGACTCTGAAGATGA 1043
Query 1460 TAAATCTTGGCTGAGG-ATGCCCTGGCCAGAAGAAGAGTTGGAAAAGCTCTTTGTCAAAA 1518
|| |||||||||||| || |||||||||||||||||||||||||| |||||||| || |
Sbjct 1044 TAGTTCTTGGCTGAGGCAT-CCCTGGCCAGAAGAAGAGTTGGAAAAACTCTTTGTTAAGA 1102
Query 1519 TGTCTGATTTCGAGG 1533
|||||||||||||||
Sbjct 1103 TGTCTGATTTCGAGG 1117
Score = 933 bits (505), Expect = 0.0
Identities = 677/761 (89%), Gaps = 8/761 (1%)
Strand=Plus/Plus
Query 1684 AGGCTTTCGGGGTAGACTTAGAGACCGGATTTTTGCTCTATGGACCACCGGGTTGTGGCA 1743
||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1464 AGGCTTTTGGGGTAGACTTAGAGGTTGGATTTTTACTCTATGGACCACCGGGTTGTGGCA 1523
Query 1744 AGACATTGATTGCAAAGGCAGCTGCTAACGAGGCTGGAGCTAATTTCATGCACATCAAGG 1803
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1524 AGACATTGATTGCAAAGGCAGTTGCTAACGAGGCAGGAGCTAATTTCATGCACATCAAGG 1583
Query 1804 GTGCAGAACTTCTAAATAAATACGTTGGAGAAAGTGAGCTTGCTATTCGTACGTTATTTC 1863
||||||| |||||||| || ||||||||||| || |||||||||||||| || || ||||
Sbjct 1584 GTGCAGAGCTTCTAAACAAGTACGTTGGAGAGAGCGAGCTTGCTATTCGGACATTGTTTC 1643
Query 1864 AGCGCGCCCGGACATGTGCACCATGTGTAATCTTCTTTGATGAGGTGGATGCTTTGACAA 1923
|||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 1644 AGCGTGCCCGGACATGTTCGCCATGTGTGATCTTCTTTGATGAGGTGGATGCTTTGACAA 1703
Query 1924 CAAGTCGTGGCAAAGAAGGTGCTTGGGTTGTGGAACGACTTTTGAACCAGTTTCTTGTTG 1983
|||| ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||
Sbjct 1704 CAAGCCGTGGCAAAGAAGGTGCCTGGGTTGTTGAACGGCTTTTAAACCAGTTCCTTGTTG 1763
Query 1984 AGCTGGATGGTGGAGAGAGGCGTAATGTATATGTAATTGGAGCTACAAACAGGCCAGATG 2043
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1764 AGCTAGACGGTGGAGAGAGGCGTAATGTATACGTAATTGGAGCTACAAACAGGCCAGATG 1823
Query 2044 TAGTTGATCCTGCTTTCTTGAGACCGGGTAGGTTTGGGAATCTTCTTTATGTACCCCTCC 2103
|| |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1824 TAATTGATCCTGCGTTCTTGAGACCTGGTAGGTTTGGGAATCTTCTATATGTACCCCTCC 1883
Query 2104 CCAACGCGGATGAGCGAGCTTCAATTCTAAAAGCTATTGCAAGGAAGAAACCGATAGATC 2163
| ||||| ||||| || |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1884 CTAACGCCGATGAACGTGCTTCAATTCTAAAAGCTATTGCAAGGAAGAAGCCCATAGATC 1943
Query 2164 CTAGTGTTGATCTGGTTGGAATCGCAAAGATGAACTGTGAAGGTTTCAGCGGAGCTGATC 2223
||||||||||||| | | | || ||||||||||| |||||||||||||||||||||||||
Sbjct 1944 CTAGTGTTGATCTTGATAGCATTGCAAAGATGAATTGTGAAGGTTTCAGCGGAGCTGATC 2003
Query 2224 TCGCGCACTTGGTGCAAAAAGCTACATTCCAAGCAGTGGAGGAAATGAT-AGGCTC-CA- 2280
|||| |||||||||||||||||||||||||| ||||||||||| || | | | ||
Sbjct 2004 TCGCTCACTTGGTGCAAAAAGCTACATTCCAGGCAGTGGAGGAGATCACCACAATTTCAT 2063
Query 2281 GTGAGTCGTCTGAAGATGATGTTTCAGATATAACCCAGTGTACAATCAAG-TCAAAACAT 2339
|||| | ||| || ||| || |||||| || |||||||| || ||| | | |||
Sbjct 2064 GTGAA--GA-TGATGACGATATTACAGATACAAGTCAGTGTACGATTAAGATGACT-CAT 2119
Query 2340 TTCGAGCAAGCCTTGTCCTTAGTCTCGCCCTCTGTGAACAAACAGCAAAGAAAACACTAT 2399
||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 2120 TTCGAGCAAGCATTGTCCTTAGTCTCACCTTCTGTGAACAAACAGCAAAGAAGACACTAT 2179
Query 2400 GACGCACTATCAAAAAAGCTTCAAGAAAGCGTTGGAAAGAA 2440
|| | ||||||||||||||| ||||||||| |||||| |||
Sbjct 2180 GAGGAACTATCAAAAAAGCTCCAAGAAAGCATTGGAAGGAA 2220
Score = 244 bits (132), Expect = 2e-63
Identities = 148/156 (95%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 1531 AGGAAGCAGTGAATCTAGTTCAGGCATCTTTAACAAGAGAAGGATTCTCTATCGTGCCTG 1590
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1221 AGGAAGCAGTGAATCTAGTTCAGGCATCTTTAACAAGGGAAGGATTCTCTATCGTGCCTG 1280
Query 1591 ATGTCAAGTGGGATGATGTTGGTGGACTTGACCATCTACGACTTCAATTCAATCGTTATA 1650
||||||||||||||||||||||||||||||| |||||||||||| ||||||| || ||||
Sbjct 1281 ATGTCAAGTGGGATGATGTTGGTGGACTTGAGCATCTACGACTTGAATTCAACCGCTATA 1340
Query 1651 TAGTGAGGCCTATCAAAAAGCCTGATATTTATAAGG 1686
|||| || ||||||||||||||||||||||| ||||
Sbjct 1341 TAGTCAGACCTATCAAAAAGCCTGATATTTACAAGG 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124414018640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5