BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927618

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18535.1 | Symbols:  | tubulin-tyrosine ligases | chr3:63756...   270    4e-72


> AT3G18535.1 | Symbols:  | tubulin-tyrosine ligases | chr3:6375677-6377220 
REVERSE LENGTH=1197
Length=1197

 Score =  270 bits (146),  Expect = 4e-72
 Identities = 166/175 (95%), Gaps = 4/175 (2%)
 Strand=Plus/Minus

Query  104  GAACACGGCGACGGGAGACAGTGACGGTGGCAGAGACGACGAGAGAACACAGAAAATTCG  163
            ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| 
Sbjct  198  GAACACGGCGACGGGAGACGGTGACGGTGGCAGAGACGACGAGAGAACACGGAAAATTCA  139

Query  164  GAATCAGCGGTGGA-AAATGGCGAATTCGACGACGAGATCCAGATCGGCGACGGAGATAA  222
            ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct  138  GAATCAGCGGTGGATTAA-GGCGAATTCGACGACGAGATCCAGATCGGCGACGGAGATAA  80

Query  223  GACTACGGAGAGTCGGCACTCGGCAACACAGATAGGTGAAAGAAGAAAGGGCGAA  277
            ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct  79   GACTACGGAGAGTCGGCACTCGGCAACACAGATCGGTGAAAGAA-AAAGG-CGAA  27


 Score =  128 bits (69),  Expect = 3e-29
 Identities = 81/87 (93%), Gaps = 0/87 (0%)
 Strand=Plus/Minus

Query  100  AATGGAACACGGCGACGGGAGACAGTGACGGTGGCAGAGACGACGAGAGAACACAGAAAA  159
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  274  AATGGAACACGGCGACGGGAGACAGTGACGGTGGCAGAGACGCCGAGAGAACACGGAAAA  215

Query  160  TTCGGAATCAGCGGTGGAAAATGGCGA  186
            ||| ||||||||||| ||| | |||||
Sbjct  214  TTCAGAATCAGCGGTCGAACACGGCGA  188



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12717740497


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5