BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927619
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18535.1 | Symbols: | tubulin-tyrosine ligases | chr3:63756... 1131 0.0
AT3G01435.1 | Symbols: | Expressed protein | chr3:166619-16828... 113 2e-24
> AT3G18535.1 | Symbols: | tubulin-tyrosine ligases | chr3:6375677-6377220
REVERSE LENGTH=1197
Length=1197
Score = 1131 bits (612), Expect = 0.0
Identities = 687/720 (95%), Gaps = 17/720 (2%)
Strand=Plus/Plus
Query 71 GAAGGGAGTTA-GCGATTTGGAACTAGGCGAAGGCGTGATGGAAAAACTCGTGAGCCCTT 129
||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GAA-GGAGTGATG-GATTTGGAACTAGGCGAAGGCGTGATGGAAAAACTCGTGAGCCCTT 337
Query 130 CAGGGGAAGACATGAACTCGCGAGCTCAGCAAAATGTCAAGGATAATCGGAAGAATGTAA 189
|||||||||||||||||||||||||||||| | || || | ||||||||||||
Sbjct 338 CAGGGGAAGACATGAACTCGCGAGCTCAGC---A----AA--AT--T-GGAAGAATGTAA 385
Query 190 CTACTGGAGTGACCAGT-ATTGACTCTCGGATCACCTTTTACTCAGTCGCTACCTCAGTT 248
|| ||| |||||||||| ||| ||||||||||||||||||||| | |||||||| |||||
Sbjct 386 CTGCTGAAGTGACCAGTAATT-ACTCTCGGATCACCTTTTACTTATTCGCTACCACAGTT 444
Query 249 GTCATCACCATTCTCGTTGGGTCCATCTTTGTTCTATGGTTTGACACCCGCAACGTTGGC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTCATCACCATTCTCGTTGGGTCCATCTTTGTTCTATGGTTTGACACCCGCAACGTTGGC 504
Query 309 ACCTTGCACAAGTTACTGTATGTCTTCTTGTCTGCTGCAACCATTCCATACATTGGTTTG 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 ACCTTGCACAAGTTACTGTATGTCTTCTTGTCTGCTGCAACCATTCCATACATTGGTTTG 564
Query 369 CTATTCATTTGCTTGTGCAACGATGTTCCAGTCCCGAGTTATCGGCTAGGAGCTGAGGGG 428
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 CTATTCATTTGCTTGTGCAACGATGTTCCAGTCCCGAGTTATCGGCTAGGAGCTGAGGGA 624
Query 429 CGGTTTGGGATCTACCTAGCTACAATGGTTGTCATTTATTGCATATCCTACAGCATCGAG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 CGGTTTGGGATCTACCTAGCTACAATGGTTGTCATTTATTGCATATCCTACAGCATCGAG 684
Query 489 GACTTTGATGTGATGATGGAAGTGTCATTTCTGGCGATTATGTCTATAACAGGAGCAGTT 548
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 685 GACTTTGATGTGATGATGGAAGTGTCATTTCTGGTGATTATGTCTATAATAGGAGCGGTT 744
Query 549 GCAATCGTTCAACTTCATTCTCCTGCCGAGGATTTAAATTCCAGCCGAACCGCATTCATA 608
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 745 ACAATCGTTCAACTTCATTCTCCTGCCGAGGATTTAAATTCCAGCCGAACCACATTCATA 804
Query 609 CTATTTCTAGGGACGATGTCTGCTATTCTGGGTTGTGTAGCGAAGGATTCTTGGATGTCC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 CTATTTCTAGGGACGATGTCTGCTATTCTGGGTTGTGTAGCGAAGGATTCTTGGATGTCC 864
Query 669 CTTTCTGGTAGCCTCTGTTTCTTCATGGTTGTCATGTGTCTCATCAAAATCAACTGCTTG 728
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 865 CTTTCTGGTAGCCTCTGTTTCTTCATGGTTGTCATGTGTATCATCAAAACCAACTGCTTG 924
Query 729 GCTGCTGATCATTTTGAAGAAAAACAACGAGAACGCCGTCGCCGTCGCCATCGCCATCCC 788
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 925 GCTGCTGATCATTTTGAAGAAAAACAACGAGAACGCCGTCGCCATCGCCATCGCCTTCCC 984
> AT3G01435.1 | Symbols: | Expressed protein | chr3:166619-168288
REVERSE LENGTH=811
Length=811
Score = 113 bits (61), Expect = 2e-24
Identities = 112/135 (83%), Gaps = 9/135 (7%)
Strand=Plus/Plus
Query 2 AGATATTGTGGAGAGTCCAATGGATCCGCAGACGCAGAACACTTCTTTGCCA-CGAGTCC 60
||| || |||||||||||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct 211 AGAAATCGTGGAGAGTCCAATGGATCCGCAGACGCAGAACACTTCGTTGC-AGCGACTCC 269
Query 61 AAAATGTCGAGAAGGGAGTT---A-GCGATTTGGAACTAGGC-GAAGGCGTGATGGAAAA 115
| ||||| ||||| ||||| | | | ||||||||||| | | || ||||||||| |
Sbjct 270 AGAATGTTGAGAATAGAGTTGTTAAG-GTTTTGGAACTAG-CTGGTGGAGTGATGGAAGA 327
Query 116 ACTCGTGAGCCCTTC 130
||||| |||||||||
Sbjct 328 ACTCGCGAGCCCTTC 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40689659070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5