BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927622
Length=577
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01430.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 811 0.0
> AT3G01430.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: NHL domain-containing protein (TAIR:AT5G14890.1); Has
98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:165408-166247
REVERSE LENGTH=840
Length=840
Score = 811 bits (439), Expect = 0.0
Identities = 538/584 (92%), Gaps = 13/584 (2%)
Strand=Plus/Plus
Query 1 GTTTCTCTCTATCTCTCTGAGAATGAGTCACCAATCGCCGCCGATCTCTGAAGTTGATGC 60
|||||| | | ||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 91 GTTTCTGT-T-TCTCTCTGAGAATGAGTCATCAATCGCCGCCGATCGCTGAAGTTGATGC 148
Query 61 CACCGACGATATGCACGAAGCGTTGTTCGCGAAGCGAGGCTGTTGTTTCCTTATGCCATG 120
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 149 CACCGACGATATGCACGAGGCGTTGTTCGCGAAGCGAGGTTGTTGTTTCCTCATGCCCTG 208
Query 121 CCTAGCCTCATCTCAGCCGTCCACTCGCGGCGGATCTGTGTGGTGGCAACGGATCACGAC 180
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 209 CCTTGCCTCATCTCAGCCATCAACTCGCGGCGGATCTGTGTGGTGGCAACGGATCACGAC 268
Query 181 CGTCGACAAACTCGAACCCGACGAACGATGGTGGATCCGAGGGTGGCGGAGGATGAGGGA 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 269 CGTCGACAAACTCGAACCCGACGAGCGATGGTGGATCCGAGGGTGGCGGAGGATGAGGGA 328
Query 241 GTGGTCGGAGCTTGTCGCCGGTCCTAGATGGAAGACTTTTATCCGCCGATTCGGACGCAA 300
|||||||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||
Sbjct 329 GTGGTCGGAGCTCGTCGCTGGACCTAGATGGAAGACGTATATCCGCCGGTTCGGACGCAG 388
Query 301 CCACTGCTGCGGAGGAGGAGGAGGGAGAGTCGGAAACAGTAGCGGAGGATGC------GG 354
| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 389 CAACTGCTGTGGAGGAGGAGGAGGGAGAGTCGGAAACAGCAGCGGAGGATGCGGAGGTGG 448
Query 355 TGCAATGACTAACCGG---TCGGATCAGGGTAAATTCCGGTACGATCCGTTGAGCTACTC 411
||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 449 TGCAATGCCTAACCGGTCATCGGATCAGGGTAAATTCCGGTACGATCAGTTGAGCTACTC 508
Query 412 ATTAAATTTCGATGACGGGAAGCAAACCGGACATTTTGACGACGAGTTCCCGTACCGAGA 471
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 509 GTTAAATTTCGATGACGGAAATCAAACCGGACATTTTGACGACGAGTTCCCGTACCGAGA 568
Query 472 TTACTCGATGAGATTCGCTGCGCCATCGTTACCGGTTTCCACTAAATGCTCAATCGATTT 531
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 569 TTACTCGATGAGATTCGCTGCGCCTTCCTTACCGGTTTCCACTAAATGCTCAATTGATTT 628
Query 532 CGATAGCGACAT-GATGGATAAGTGAATGTCACGCGCTCGACTT 574
|||||||||||| ||| | ||||||| | ||||||||||||||
Sbjct 629 CGATAGCGACATTGATA-ACAAGTGAAAGCCACGCGCTCGACTT 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27729249144
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5