BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927644
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01300.1 | Symbols: | Protein kinase superfamily protein | ... 1744 0.0
AT5G15080.1 | Symbols: | Protein kinase superfamily protein | ... 987 0.0
> AT3G01300.1 | Symbols: | Protein kinase superfamily protein
| chr3:90598-93585 REVERSE LENGTH=1942
Length=1942
Score = 1744 bits (944), Expect = 0.0
Identities = 1077/1140 (94%), Gaps = 14/1140 (1%)
Strand=Plus/Plus
Query 12 TTTTGGGGGAGATGGGTTTAGATTCTGTCAAAGTTATGGAGAATTGGCAATCGAAGACAT 71
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 240 TTTTGGGGGAGATGGGTTTCGATTCTGTTAAAGTTATGGAGAATTGGCAATCCAAGACAT 299
Query 72 CTAATGAGAGTGATaagaagaagaag-a--ggaggaggaagaagaacaacaatgtcagaa 128
||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 300 CTAATGAGAATGAGAAGAAGAAGAAGAAGCGGAGGAGGAAGAAGAACAACAATGTCAGAA 359
Query 129 acactgaacatgtagacgaagaagaagaagaagCTAATGGGTGTTGGGTCAAATTTAGGT 188
||| ||||||| | | ||||||||||| |||||||||||||||||||||||||
Sbjct 360 ACAGTGAACAT-T--------ATGAAGAAGAAGCAAATGGGTGTTGGGTCAAATTTAGGT 410
Query 189 TTATAGTCTGTTGCGTTTCTTCAACTTCAGACGTTGATAGCTCTCTCAGTCTCTCCACAA 248
|||||||||||||| ||||||||| ||||||||||| | |||||||| |||||| || |
Sbjct 411 ATATAGTCTGTTGCGCTTCTTCAACATCAGACGTTGAGACCTCTCTCACTCTCTCTACTA 470
Query 249 GCACTGTGGGAAGTCAGTCCGCAATTGTGAAATCGAATGACCAACCGGTTGGCCCTGTCT 308
||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 471 GCACTGTGGGAAGTCAGTCCGCAATTGTGCAATCAAATGACCAACCGGTTGGCCCAGTCT 530
Query 309 CTTCTACCACTACAACTAGCAATGCAGAAAGCTCTTTGTCCACTCCAATGATAAGTGAAG 368
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 531 CTTCTACTACTACAACTAGCAATGCAGAAAGCTCTTTGTCCACTCCTATCATAAGTGAAG 590
Query 369 AACTTAAGATCTATTCTCA-CTTAAAGAAGTTTACTTTCATTGATCTCAAGTTGGCTACT 427
||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 591 AACTTAACATCTATTCTCACCTT-AAGAAGTTTTCTTTCATTGATCTCAAGTTGGCTACT 649
Query 428 AGAAATTTCAGACCCGAAAGTCTTCTCGGAGAAGGTGGCTTTGGTTGCGTCTTCAAAGGG 487
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 650 AGAAATTTCAGACCTGAAAGCCTTCTCGGAGAAGGTGGCTTTGGTTGTGTCTTCAAAGGC 709
Query 488 TGGGTCGAGGAGAACGGAACTGCTCCTGTTAAGCCTGGTACTGGGCTCACTGTAGCCGTC 547
|||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||
Sbjct 710 TGGGTCGAGGAGAACGGAACTGCTCCTGTTAAGCCTGGCACTGGCCTTACTGTTGCCGTC 769
Query 548 AAAACCTTAAATCCTGACGGACTTCAGGGTCATAAAGAGTGGCTTGCTGAGATTAATTAT 607
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 770 AAAACCTTAAATCCTGATGGCCTTCAGGGTCATAAAGAGTGGCTTGCTGAGATTAATTAT 829
Query 608 CTTGGTAATCTTCTTCATCCCAATCTTGTTAAACTGGTGGGTTATTGTATCGAAGATGAT 667
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CTTGGTAATCTTCTCCATCCCAATCTTGTTAAACTGGTGGGTTATTGTATCGAAGATGAT 889
Query 668 CAAAGGCTGCTGGTATATGAGTTTATGCCTCGAGGAAGTTTGGAGAATCACCTTTTTAGA 727
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 890 CAAAGGCTGCTTGTATATGAGTTTATGCCTCGAGGAAGTTTGGAGAATCACCTTTTCAGA 949
Query 728 AGGTCGTTGCCTCTTCCATGGTCAATTCGGATGAAGATTGCGTTAGGTGCTGCAAAGGGT 787
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 950 AGGTCCTTGCCTCTTCCATGGTCAATTCGGATGAAGATTGCATTAGGTGCTGCAAAGGGT 1009
Query 788 CTCAGTTTCCTTCACGAAGAAGCTTTAAAGCCGGTCATTTATCGAGATTTCAAAACCTCA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CTCAGTTTCCTTCACGAAGAAGCTTTAAAGCCGGTCATTTATCGAGATTTCAAAACCTCA 1069
Query 848 AATATTTTACTGGATGCAGAGTACAATGCTAAATTATCAGATTTTGGGCTTGCCAAAGAT 907
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AATATTTTACTGGATGGGGAGTACAATGCTAAATTATCAGATTTTGGGCTTGCCAAAGAT 1129
Query 908 GCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGCGTCATGGGCACTTATGGTTACGCT 967
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1130 GCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGAGTCATGGGCACTTATGGTTACGCT 1189
Query 968 GCTCCCGAGTATGTAATGACCGGTCACTTGACATCAAAAAGCGATGTTTACAGTTTCGGT 1027
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1190 GCCCCCGAGTATGTAATGACCGGTCACTTGACATCAAAAAGCGACGTTTACAGTTTCGGT 1249
Query 1028 GTGGTTCTTCTTGAAATGCTGACTGGTAGAAGATCTATGGACAAAAACCGACCAAACGGT 1087
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1250 GTGGTTCTTCTCGAAATGCTGACTGGTAGAAGATCAATGGACAAAAATCGACCAAACGGT 1309
Query 1088 GAACACAACCTTGTCGAATGGGCGAGACCGCATCTCCTGGACAAAAGAAGATTCTACCGG 1147
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GAACACAACCTCGTTGAATGGGCGAGACCGCATCTCCTGGACAAAAGAAGATTCTACCGG 1369
Score = 527 bits (285), Expect = 1e-148
Identities = 324/342 (95%), Gaps = 6/342 (2%)
Strand=Plus/Plus
Query 1148 GGAGCACAAAGAGTGACTCAGCTTGCAGCACAATGCCTTAGCCGTGACTCCAAAATAAGA 1207
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 GGAGCACAAAAAGTGACTCAGCTTGCAGCACAATGCCTTAGCCGTGACTCCAAAATAAGA 1468
Query 1208 CCCAAAATGAGTGAAGTGGTGGAAGTCCTTAAGCCTCTCCCACACCTCAAGGACATGGCT 1267
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1469 CCCAAAATGAGTGAAGTGGTGGAAGTACTTAAGCCTCTCCCACACCTCAAGGACATGGCT 1528
Query 1268 AGCGCTTCTTACTACTTCCAGACTATGCAAGCTGAACGTTTGAAAGCTGGGTCTGGGTCT 1327
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1529 AGCGCTTCTTACTACTTCCAGACAATGCAAGCTGAACGTTTGAAAGCTGGTTCTGGTTCT 1588
Query 1328 GGGTCATCGGGTCGTGGATTCGGATCAAGAAACGGGCAACCACCAGTGTTTCGGACATTG 1387
|| || | || |||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1589 GGTTC-T-GG-TCGTGGATTCGGGTCAAGAAACGGGCAACCA---GTGTTTCGGACATTG 1642
Query 1388 TCTAGTCCTCATGGTCAAGCTGGTTCTTCGCCTTATCGTCATCAGATTCCGTCTCCTAAG 1447
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1643 TCTAGTCCTCATGGTCAAGCTGGTTCGTCGCCTTATCGTCATCAGATTCCGTCTCCTAAG 1702
Query 1448 CCTAAAGGTGCAACTACTTAGATTGGCTCTTTATTGTGGACG 1489
||||||||||||||||||||||||||||| | ||||||||
Sbjct 1703 CCTAAAGGTGCAACTACTTAGATTGGCTCGCAAGTGTGGACG 1744
> AT5G15080.1 | Symbols: | Protein kinase superfamily protein
| chr5:4886114-4888788 FORWARD LENGTH=2015
Length=2015
Score = 987 bits (534), Expect = 0.0
Identities = 962/1164 (83%), Gaps = 47/1164 (4%)
Strand=Plus/Plus
Query 13 TTTGGGGGAGATGGGTTTAGATTCTGTCAAAG-TTATGGAGAATTGGCAATCGAAGACAT 71
||| || ||||||||||| ||| |||| |||| | | || ||||||| ||||| ||| |
Sbjct 292 TTT-GGTGAGATGGGTTTGGATGCTGTTAAAGCTAAAGG-GAATTGGAAATCGGAGAAAC 349
Query 72 CTAATGAGAGTGATaagaagaagaagaggaggaggaagaagaacaacaatg-tcagaaac 130
|||| |||| || |||| ||| | | | | ||||||||| ||| | | |||
Sbjct 350 CTAAAGAGACTG---AGAATAAG-A-ATCA-CAAGAAGAAGAATGGTGATGATAATAAA- 402
Query 131 act-gaacatgtagacgaagaagaagaagaagCTAA-TGGGTGTTGGGTCAAATTTAGGT 188
| | ||| ||| ||| |||||||||| |||||| || ||| || ||||||||||||||||
Sbjct 403 AGTAGAA-ATGAAGAAGAAGAAGAAGGAGAAGC-AAGTGGTTGCTGGGTCAAATTTAGGT 460
Query 189 TTATAG-TCT-GTTGCGTTTCTTCAACTTCAGACGTTGATAG---C-TC-TC-TC-AGTC 239
|||| | | | ||||| | |||||| |||||| ||||| | | || || || | ||
Sbjct 461 TTAT-GAT-TGGTTGCATACCTTCAAAATCAGACCTTGAT-GCTTCTTCTTCTTCTA-TC 516
Query 240 TCT-CCAC-AA--GCACTG---------TGGGAAGTCAGTCCGCAATTGTGAAATCGAAT 286
| | | | || |||||| ||| |||| | || |||| || |||||| |||
Sbjct 517 TATGGCTCTAACTGCACTGTTACAACAATGGAAAGTAAATCGGCAAATGAGAAATCAAAT 576
Query 287 GACCAACCGGTTGGCCCTGTCTCTTCTACCACTACAACTAGCAATGCAGAAAGCTCTTTG 346
|| ||||| ||||| | || || || || || |||||||||||||||||||||||||
Sbjct 577 GATCAACCAGTTGGTCAAGTTTCCTCCACAACAACAACTAGCAATGCAGAAAGCTCTTCA 636
Query 347 TCCACTCCAATGATAAGTGAAGAACTTAAGATCTATTCTCACTTAAAGAAGTTTACTTTC 406
|| |||||| | || |||||||||||||| || | ||||||| | |||||||||||||
Sbjct 637 TCTACTCCAGTCATCAGTGAAGAACTTAACATTTCTTCTCACCTCCGGAAGTTTACTTTC 696
Query 407 ATTGATCTCAAGTTGGCTACTAGAAATTTCAGACCCGAAAGTCTTCTCGGAGAAGGTGGC 466
| |||||| ||| | |||||||||||||||||||||| |||||||| |||||||||||
Sbjct 697 AATGATCTTAAGCTATCTACTAGAAATTTCAGACCCGAGAGTCTTCTTGGAGAAGGTGGT 756
Query 467 TTTGGTTGCGTCTTCAAAGGGTGGGTCGAGGAGAACGGAACTGCTCCTGTTAAGCCTGGT 526
|||||||| ||||| ||||| ||| |||| || ||||| |||||||||||||| ||||||
Sbjct 757 TTTGGTTGTGTCTTTAAAGGATGGATCGAAGAAAACGGTACTGCTCCTGTTAAACCTGGT 816
Query 527 ACTGGGCTCACTGTAGCCGTCAAAACCTTAAATCCTGACGGACTTCAGGGTCATAAAGAG 586
||||| || || || || |||||||||||||||||||| |||||||| ||||| |||||
Sbjct 817 ACTGGTCTTACGGTTGCAGTCAAAACCTTAAATCCTGATGGACTTCAAGGTCACAAAGAA 876
Query 587 TGGCTTGCTGAGATTAATTAT-CTTGGTAATCTTCTTCATCCCAATCTTGTTAAACTGGT 645
||||||||||||||||||| | |||||||| ||||| ||||| ||||| ||||| || ||
Sbjct 877 TGGCTTGCTGAGATTAATT-TCCTTGGTAACCTTCTCCATCCAAATCTAGTTAAGCTTGT 935
Query 646 GGGTTATTGTATCGAAGATGATCAAAGGCTGCTGGTATATGAGTTTATGCCTCGAGGAAG 705
|||||||| || ||||||||||||||| |||| || ||||||||||||||| |||||||
Sbjct 936 TGGTTATTGCATTGAAGATGATCAAAGGTTGCTTGTGTATGAGTTTATGCCTAGAGGAAG 995
Query 706 TTTGGAGAATCACCTTTTTAGAAGGTCGTTGCCTCTTCCATGGTCAATTCGGATGAAGAT 765
| |||||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||
Sbjct 996 TCTGGAGAATCACCTTTTCAGAAGGTCCTTGCCTCTTCCTTGGTCTATCCGGATGAAGAT 1055
Query 766 TGCGTTAGGTGCTGCAAAGGGTCTCAGTTTCCTTCACGAAGAAGCTTTAAAGCCGGTCAT 825
||| |||||||||||||| |||||||||||||| || ||||||||||| ||||| || ||
Sbjct 1056 TGCATTAGGTGCTGCAAAAGGTCTCAGTTTCCTCCATGAAGAAGCTTTGAAGCCTGTTAT 1115
Query 826 TTATCGAGATTTCAAAACCTCAAATATTTTACTGGATGCAGAGTACAATGCTAAATTATC 885
||||||||||||||||| ||||| |||||||| |||||||| |||||||| ||| ||||
Sbjct 1116 ATATCGAGATTTCAAAACATCAAACATTTTACTTGATGCAGACTACAATGCAAAACTATC 1175
Query 886 AGATTTTGGGCTTGCCAAAGATGCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGCGT 945
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | ||
Sbjct 1176 AGATTTTGGACTTGCCAAAGATGCTCCTGATGAAGGCAAAACCCATGTTTCTACTAGGGT 1235
Query 946 CATGGGCACTTATGGTTACGCTGCTCCCGAGTATGTAATGACCGGTCACTTGACATCAAA 1005
||||| || ||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1236 TATGGGTACATATGGCTATGCTGCTCCCGAATATGTAATGACCGGTCACTTGACATCAAA 1295
Query 1006 AAGCGATGTTTACAGTTTCGGTGTGGTTCTTCTTGAAATGCTGACTGGTA-GAAGATCTA 1064
||||||||||| ||||| || |||||||| ||||||||| ||||||| | || ||||||
Sbjct 1296 GAGCGATGTTTATAGTTTTGGGGTGGTTCTACTTGAAATGTTGACTGG-ACGACGATCTA 1354
Query 1065 TGGACAAAAACCGACCAAACGGTGAACACAACCTT-GTCGAATGGGCGAGACCGCATCTC 1123
||||||||||||| ||||| ||||| |||||| || || |||||||| |||||||||||
Sbjct 1355 TGGACAAAAACCGCCCAAATGGTGAGCACAAC-TTAGTGGAATGGGCAAGACCGCATCTT 1413
Query 1124 CTGGACAAAAGAAGATTCTACCGG 1147
|| ||||| ||||| || ||||||
Sbjct 1414 CTTGACAAGAGAAGGTTTTACCGG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73443397335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5