BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927648
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01260.1 | Symbols: | Galactose mutarotase-like superfamily... 926 0.0
> AT3G01260.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr3:80176-82005 REVERSE LENGTH=1349
Length=1349
Score = 926 bits (501), Expect = 0.0
Identities = 609/659 (92%), Gaps = 15/659 (2%)
Strand=Plus/Plus
Query 166 AAGAAGACGTTGGGGGTACACGAGCTAAAGAAGGGGAATCTAACGGCCAAATTTACAAAC 225
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 346 AAGAAGACGTTGAGGGTACACGAGCTAAAGAAGGGGAATCTAACGGTCAAATTTACAAAC 405
Query 226 CGGGGTGCTTCTATCATGTCTCTCCTTTTCCCCAATAAAAATGGAAAAATAGAGGACTTT 285
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 406 CGGGGTGCTTCTATCATGTCTCTCCTTTTCCCCAATATAAATGGAAAATTAGAGGACATT 465
Query 286 GTTCTTGGATATGACAGCGTCAATGACTACATGAATGATACGGTATTTTGTGGAGTGACG 345
||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||
Sbjct 466 GTTCTGGGATATGACAGCGTCAATGACCACATGATTGACACGGTATTTTGTGGAGTGACG 525
Query 346 TTGGCACGTGTAGCCAATAAAAGGGAAAAGACCGTTGCAAACGATGGC----A-A--A-- 396
|||||||||||||||| ||||| ||||||| ||| ||||||||||||| | | |
Sbjct 526 TTGGCACGTGTAGCCAGTAAAAAGGAAAAGGCCGCTGCAAACGATGGCAAAAACACGATC 585
Query 397 CATGGTGTGACGAAAGAGTCTGGCGATGTCATTTGGACAGTTAAGAAACACAACCATAAT 456
||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||
Sbjct 586 CATGGTGGGACGAAAGAGTCTAGCGATGTGATTTGGAGAGTTAAGAAACACAAACATAAT 645
Query 457 GGCAAAAAACCTTATATTGTTTTCAGAT--AC-ACAAGTCCTGATGGCGATCATCAAGGG 513
||||||||||||||||||||||||| || || |||||||||||||||| ||||||||
Sbjct 646 GGCAAAAAACCTTATATTGTTTTCACATACACAACAAGTCCTGATGGCG---ATCAAGGG 702
Query 514 AAACTTGAAGTCACTGTGACGTATAAGCTGGTAGGAGATAACAAATTGGAAATGGTGATG 573
|||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||
Sbjct 703 AAACTTGAAGTCACTGTGACATATAAGCTGGTAGGAGAAAACAGATTGAAAATGGTGATG 762
Query 574 GAAGCAAAGGCTAAAGAGAAAGCAACTCCGGTGAATTTGGTTCATCGTTCTTATTGGAAT 633
|||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 763 CAAGCAAAGGCTAAAGAGAAAACTACTCCGTTGAATTTGGTTCATCGTTCTTATTGGAAT 822
Query 634 CTTGGTGGTCATAACAATGAAGATATCTTGTCTCAAGAAATTCAAATTCTCGGTTCCGGT 693
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 823 CTTGGTGGTCATAACAATGAAGATATCTTCTCTGAAGAAATTCAAATTCTCGGTTCCGGT 882
Query 694 TATGCTCACCTCGACGATAATCTCACTCCAACCGGAAAAATTCTCGCCGTTAAAGGAACA 753
||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 883 TATACTCATCTCGACGATAATCTCACTCCAACCGGGAAAATCCTCGCCGTTAAAGGAACA 942
Query 754 CCGTACGATTTTCGCCAACTCCGACCTATTAAAGACAACATCAATGAGCTTAAGACAGG 812
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CCCTTCGATTTTCGCCAACTCCGACCTATTAAAGACAACATCAATGAGCTTAAGACAGG 1001
Score = 309 bits (167), Expect = 4e-83
Identities = 244/279 (87%), Gaps = 14/279 (5%)
Strand=Plus/Plus
Query 812 GAAAAGTCGTGGAGCTTGTGGACAAGAAATCGAAGATAAAAATGGAGCTGTCTACAGACC 871
||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 1046 GAAAAGTCGTGGAGCTTGTGGACAATAAATCGAAGATAAAAATGGAGTTATCTACAGACC 1105
Query 872 AATCTGGTCTAAAATTCTATACCGGGGGAAGGTTGaaaaaaaataaaaaTGGATCGGTTT 931
|||| ||||||| || | ||| | | ||| | |||||||||||||||
Sbjct 1106 AATCCGGTCTAAGGTTGAAAACC------A--CT---AAACCA-AAAAATGGATCGGTTC 1153
Query 932 ATAAAGCTTACTCCGGTTTATGTCTAGAATCACATGCAATCAATTACCAATGTCGTCCTT 991
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1154 ATAAAGCTTACTCTGGTTTATGTCTAGAATCACATGCAATCAATTACCAATATCGTTCTT 1213
Query 992 CGCAGATAGTTGAACCGGGGAAAAATTATAAGCATACTATGCTCTTTAAGTTTTCTATTG 1051
|||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 1214 CGCAGATAATTGAACCGGGGGAAACTTATAAGCATACTATGCTCTTTAAGTTTTCTTTTG 1273
Query 1052 TTCCGTGAACTTTGTAACGTTACTTT--CTGGAAAGTTT 1088
|||||| ||||||||||||||||||| |||||||||||
Sbjct 1274 TTCCGTAAACTTTGTAACGTTACTTTTTCTGGAAAGTTT 1312
Score = 244 bits (132), Expect = 1e-63
Identities = 143/148 (97%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 22 ATGGTTAGGATTTCAAG-TTTAGTGTGTTCGGTTCTTTTGGTTACAATAGGAGTCATGGT 80
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTAGGATTTC-AGTTTTAGTGTGTTTGGTTCTTTTGGTTACAATAGGAGTCATGGT 59
Query 81 TAGTGTCTCACTCGCTGACAACAACGAAGAGAAATCGACTGATCTGAAGAAAGTCAAAGG 140
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 TAGTGTCTCACTCGCTGACAACAACGAAGAGAAATCGACTGATCTGAAGAAATTCAAAGG 119
Query 141 AGGAGTAACTGATCGCTCGATTAGTAAG 168
|||||||||||||| |||||||||||||
Sbjct 120 AGGAGTAACTGATCACTCGATTAGTAAG 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53312978790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5